←Back to structures

envelope_glycoprotein_UL130

Euk-Vir

Human_betaherpesvirus_5

envelope_glycoprotein_UL130__YP_081565__Human_betaherpesvirus_5__10359

Identity

Accession:
YP_081565 ↗
Protein ID:
envelope_glycoprotein_UL130
Kingdom:
euk

Quality

68.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Human_betaherpesvirus_5

TaxID: 10359

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 25-133
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11668.14 best Gp_UL130 178.9 9.80e-53 71.6% 49.1%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 33.0 3.85e-01 86.2% 70.9%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 52.0 4.91e-01 90.8% 92.2%
2l2fA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.59 30.0 3.09e-01 73.4% 48.1%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.58 37.0 4.05e-01 81.7% 79.3%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.57 29.0 2.97e-01 73.4% 48.1%
1yx2A02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.53 31.0 3.39e-01 73.4% 70.9%
1wsrA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.52 31.0 3.31e-01 73.4% 68.1%
1v5vA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.52 31.0 3.31e-01 73.4% 67.4%
3girA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.52 30.0 3.33e-01 73.4% 70.9%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 4.37e-01 98.2% 88.8%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 4.20e-01 93.6% 90.9%
3a8kA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.52 30.0 3.32e-01 73.4% 70.5%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 4.25e-01 94.5% 93.4%
1droA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 4.18e-01 90.8% 87.7%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.51 27.0 3.25e-01 71.6% 78.3%
4qwoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 40.0 3.73e-01 81.7% 87.9%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.95e-01 91.7% 80.7%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 40.0 3.58e-01 87.2% 71.9%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2095508 1170.1.2.4 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Gp_UL130 0.92 61.0 7.47e-01 77.1% 100.0%
3911547 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.73 50.0 5.65e-01 80.7% 89.4%
3694693 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.70 39.0 4.93e-01 86.2% 92.3%
1032344 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.66 47.0 5.35e-01 75.2% 98.8%
422486 705.1.1.1 ↗ beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N › CVNH 0.57 29.0 2.97e-01 73.4% 48.1%
4961004 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.54 31.0 3.65e-01 72.5% 84.3%
3544563 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 4.56e-01 93.6% 91.4%
3207518 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.54 46.0 4.29e-01 94.5% 85.0%
3914585 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 42.0 4.34e-01 85.3% 87.6%
3907293 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 43.0 4.44e-01 90.8% 90.5%
4930437 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.53 44.0 4.55e-01 91.7% 99.0%
3226939 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 4.40e-01 91.7% 92.0%
3627778 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.53 42.0 4.38e-01 94.5% 91.0%
5079209 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 42.0 3.80e-01 97.2% 64.1%
3795181 5.1.4.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.52 37.0 2.50e-01 74.3% 93.1%
3564088 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 4.34e-01 89.9% 91.8%
3715477 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.51 43.0 4.02e-01 90.8% 76.3%
3276134 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 41.0 3.99e-01 87.2% 80.0%
D2 medium residues 134-214
PDB
Domain cluster: rep: hypothetical_protein_KM472_gp186__YP_004933919__Cynomolgus_macaque_cytomegalovirus_strain_Ottawa__944969__D13-79
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11668.14 best Gp_UL130 188.9 8.30e-56 100.0% 50.9%