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envelope_glycoprotein

Euk-Vir

Watermelon_bud_necrosis_virus

envelope_glycoprotein__YP_009505546__Watermelon_bud_necrosis_virus__76052

Identity

Accession:
YP_009505546 ↗
Protein ID:
envelope_glycoprotein
Kingdom:
euk

Quality

66.1 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Elliovirales› Tospoviridae› Orthotospovirus› Watermelon_bud_necrosis_virus

TaxID: 76052

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 293-426
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6j8eA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.61 29.0 3.25e-01 100.0% 56.6%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5006036 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.52 34.0 2.96e-01 100.0% 42.9%
3170063 180.1.1.1 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.51 34.0 3.08e-01 85.1% 48.4%
D2 medium residues 107-192
PDB
D3 medium residues 196-292
PDB
D4 medium residues 435-496
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t6cA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.76 43.0 3.03e-01 72.6% 19.3%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.72 46.0 4.15e-01 71.0% 48.8%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 46.0 4.22e-01 74.2% 58.0%
2aujD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.65 42.0 4.28e-01 98.4% 66.1%
1inyA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.64 48.0 2.96e-01 80.6% 27.1%
2qzuA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.64 43.0 3.93e-01 80.6% 51.8%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.63 46.0 2.84e-01 77.4% 39.2%
1n7vA02 2.60.330.10 Mainly Beta › Sandwich › receptor-binding protein prd1-p2, domain 2 › receptor-binding protein prd1-p2, domain 2 0.61 46.0 3.72e-01 82.3% 83.7%
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 48.0 4.22e-01 85.5% 77.8%
1s14B00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.60 44.0 3.19e-01 79.0% 43.8%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 43.0 3.12e-01 75.8% 53.1%
1nkqB00 3.90.850.10 Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain 0.60 53.0 3.54e-01 98.4% 94.3%
3lmlA03 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 47.0 4.25e-01 85.5% 85.9%
1sazA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 41.0 2.86e-01 72.6% 57.9%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 44.0 3.34e-01 82.3% 43.9%
1upsB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 44.0 2.85e-01 80.6% 54.7%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.58 43.0 3.09e-01 98.4% 25.9%
4mdaA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 42.0 2.92e-01 77.4% 29.0%
4ci8A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 42.0 2.70e-01 80.6% 44.6%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 43.0 2.79e-01 80.6% 40.2%
3wgxB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 40.0 3.27e-01 74.2% 83.0%
1oh1A00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.56 48.0 4.07e-01 100.0% 95.4%
1e8uA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 44.0 2.67e-01 90.3% 88.3%
3g7pA00 1.10.3100.20 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Protein of unknown function DUF269 0.55 48.0 3.71e-01 100.0% 71.7%
2w00A01 3.90.1570.50 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.55 48.0 3.51e-01 98.4% 39.8%
7rheA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 38.0 2.74e-01 72.6% 60.0%
6qm7N00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 44.0 3.15e-01 95.2% 83.9%
1h4iA00 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.54 39.0 2.34e-01 80.6% 87.7%
4ywrA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 47.0 3.20e-01 100.0% 74.6%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 45.0 3.85e-01 100.0% 57.7%
4htlA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 36.0 2.58e-01 72.6% 32.1%
4immA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 47.0 2.93e-01 100.0% 96.1%
3cwvA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.52 43.0 3.15e-01 100.0% 74.7%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.52 46.0 3.64e-01 100.0% 73.6%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 43.0 3.05e-01 96.8% 29.1%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 45.0 3.01e-01 100.0% 41.6%
1aj6A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 44.0 3.17e-01 100.0% 74.7%
3vgzC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 36.0 2.35e-01 77.4% 33.7%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3973860 809.1.1.0 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.71 49.0 3.96e-01 71.0% 60.0%
3255777 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.71 50.0 4.31e-01 74.2% 92.6%
3264756 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.70 49.0 4.19e-01 74.2% 92.0%
4944430 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.67 42.0 3.84e-01 71.0% 48.8%
3605319 5.1.4.238 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7048 0.65 48.0 2.87e-01 77.4% 72.3%
2716360 7063.1.1.1 ↗ a/b three-layered sandwiches › C-terminal domain of poxin › C-terminal domain of poxin › C-terminal domain of poxin › Baculo_p26 0.64 47.0 4.41e-01 75.8% 94.5%
4643654 7063.1.1.0 ↗ a/b three-layered sandwiches › C-terminal domain of poxin › C-terminal domain of poxin › C-terminal domain of poxin 0.64 46.0 4.34e-01 75.8% 97.3%
4961801 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.63 48.0 3.26e-01 80.6% 62.9%
4376478 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 49.0 4.24e-01 98.4% 56.7%
3240229 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.63 47.0 3.04e-01 80.6% 18.2%
3668721 101.1.12.0 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.61 43.0 3.51e-01 74.2% 58.3%
4978599 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 45.0 2.80e-01 79.0% 42.2%
1223480 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.61 46.0 3.20e-01 80.6% 49.5%
1223478 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.61 46.0 3.01e-01 80.6% 38.4%
4943430 225.1.1.39 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › DNA_mis_repair 0.60 45.0 3.20e-01 79.0% 53.0%
4957980 2484.1.1.341 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Salactin 0.60 43.0 3.01e-01 74.2% 53.9%
3519114 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 45.0 3.74e-01 100.0% 45.5%
3579466 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.59 46.0 4.89e-01 90.3% 92.7%
3214097 330.1.1.24 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Paxt-1_C 0.59 43.0 3.93e-01 87.1% 57.6%
4969341 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.58 43.0 2.98e-01 80.6% 46.7%
3788141 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 44.0 4.21e-01 100.0% 70.7%
3690594 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 51.0 3.00e-01 100.0% 98.1%
3244558 11.1.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.58 41.0 2.60e-01 75.8% 23.5%
4027851 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.57 45.0 3.47e-01 100.0% 37.2%
3839737 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.57 42.0 3.69e-01 77.4% 71.1%
4452789 225.1.1.7 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.57 43.0 3.00e-01 80.6% 47.3%
3891879 11.1.1.117 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EpoR_lig-bind 0.55 49.0 4.10e-01 98.4% 95.2%
3592277 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 39.0 2.84e-01 75.8% 68.6%
3915668 330.1.1.19 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.54 44.0 3.93e-01 100.0% 62.2%
3882076 2484.1.1.109 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › bVLRF1 0.54 40.0 2.72e-01 77.4% 52.4%
3211606 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 47.0 4.26e-01 100.0% 89.4%
3352562 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.52 43.0 4.03e-01 93.5% 72.5%
3334421 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.51 43.0 3.50e-01 100.0% 58.5%
3980370 241.13.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA 0.51 40.0 3.21e-01 93.5% 40.0%
3267830 206.1.3.30 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › SPN1_m3Gcap_bd 0.51 42.0 2.86e-01 95.2% 48.8%
3413863 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 45.0 3.98e-01 98.4% 83.3%
D5 medium residues 605-661_723-822_850-895
PDB
Domain cluster: rep: glycoprotein__YP_010085106__Culex_phasma-like_virus__2010276__D222-237_310-353_369-468
D6 medium residues 662-722_823-849
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009551599__Avalon_virus__1810950__D843-903_1047-1069
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 43.6 1.90e-11 67.0% 5.7%
D7 medium residues 907-997
PDB
Domain cluster: rep: glycoprotein_precursor__YP_010086063__Alstroemeria_necrotic_streak_virus__693450__D943-1015