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envelope_glycoprotein

Euk-Vir

Alstroemeria_yellow_spot_virus

envelope_glycoprotein__YP_009553294__Alstroemeria_yellow_spot_virus__2212644

Identity

Accession:
YP_009553294 ↗
Protein ID:
envelope_glycoprotein
Kingdom:
euk

Quality

63.9 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Elliovirales› Tospoviridae› Orthotospovirus› Alstroemeria_yellow_spot_virus

TaxID: 2212644

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 628-680_765-803_916-926
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009505328__Badu_phasivirus__1980609__D739-805_894-940_1051-1072
D2 high residues 936-1026
PDB
Domain cluster: rep: glycoprotein_precursor__YP_010086063__Alstroemeria_necrotic_streak_virus__693450__D943-1015
D3 medium residues 129-217
PDB
D4 medium residues 338-384_417-449
PDB
D5 medium residues 467-543
PDB
D6 medium residues 684-762
PDB
Domain cluster: rep: putative_glycoprotein__YP_009329880__Wenling_crustacean_virus_9__1923492__D506-563
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 41.8 6.60e-11 98.7% 6.3%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vfrA04 3.30.70.2520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 44.0 4.17e-01 74.7% 68.1%
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 46.0 4.33e-01 82.3% 92.9%
1w1oA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.60 45.0 3.30e-01 81.0% 32.5%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 42.0 3.97e-01 79.7% 92.9%
1ao7B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 37.0 3.51e-01 78.5% 54.0%
1xcjA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 40.0 2.94e-01 75.9% 77.3%
2bc4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 36.0 3.32e-01 75.9% 48.6%
2dd8S01 3.30.70.1840 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Spike protein, C-terminal core receptor binding subdomain 0.55 42.0 3.63e-01 87.3% 57.4%
1nvmB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 41.0 3.45e-01 83.5% 53.9%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 40.0 2.77e-01 77.2% 27.0%
4e6nB00 3.30.1610.20 Alpha Beta › 2-Layer Sandwich › c-terminal autoproteolytic domain of nucleoporin nup98 › Hen1, N-terminal domain 0.55 40.0 2.92e-01 78.5% 32.1%
2bzgA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 39.0 2.90e-01 78.5% 80.8%
4dzdA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.54 38.0 3.34e-01 74.7% 94.3%
3ccfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 38.0 2.81e-01 75.9% 93.3%
2ebeA00 3.30.70.2290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF3208) 0.53 40.0 3.76e-01 84.8% 65.1%
1vkvA01 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.53 37.0 2.87e-01 72.2% 43.3%
4illB01 2.40.30.310 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 37.0 3.36e-01 74.7% 73.3%
3u6yA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.52 37.0 3.44e-01 73.4% 68.7%
3ig5A02 3.30.590.50 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › 0.52 40.0 2.72e-01 87.3% 38.5%
1ykwA01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.52 36.0 3.11e-01 72.2% 78.6%
1b7yB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.52 38.0 3.77e-01 79.7% 76.7%
2hfvA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.52 35.0 3.59e-01 74.7% 72.7%
1k8kD01 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 38.0 3.11e-01 78.5% 49.0%
3onrJ00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.51 35.0 3.70e-01 70.9% 88.2%
3bn7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 38.0 3.52e-01 79.7% 65.7%
3pcoB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.51 38.0 3.71e-01 84.8% 72.3%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 35.0 2.79e-01 73.4% 88.9%
1xtzA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.50 36.0 3.58e-01 77.2% 73.8%
2vxaA00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.50 36.0 3.82e-01 75.9% 100.0%
3hwcA02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.50 32.0 2.83e-01 100.0% 40.0%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3300663 304.12.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.64 42.0 4.47e-01 73.4% 77.1%
3503920 5090.1.1.8 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF 0.63 55.0 3.62e-01 100.0% 22.3%
3057868 5090.1.1.3 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Alpha_E1_glycop 0.62 54.0 5.19e-01 100.0% 86.0%
3617902 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.62 46.0 4.25e-01 78.5% 69.0%
3587911 304.5.1.1 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II 0.58 47.0 4.13e-01 91.1% 96.0%
3966037 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.58 41.0 3.83e-01 74.7% 69.0%
3727456 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.56 41.0 3.59e-01 77.2% 60.0%
4028387 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.56 40.0 3.77e-01 74.7% 67.4%
4871888 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.55 39.0 3.96e-01 83.5% 75.3%
3992874 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.54 40.0 3.31e-01 78.5% 52.4%
4382894 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.54 40.0 2.92e-01 81.0% 83.3%
3699110 304.4.1.14 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb 0.54 39.0 3.54e-01 75.9% 64.8%
3638246 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.54 39.0 3.36e-01 75.9% 57.6%
3927924 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.54 36.0 3.48e-01 74.7% 59.6%
3600053 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.53 38.0 2.81e-01 77.2% 81.3%
3605001 2003.1.5.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_5 0.52 37.0 2.71e-01 78.5% 79.2%
4026882 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.52 36.0 2.99e-01 75.9% 65.6%
4930212 328.7.1.0 ↗ a+b two layers › IF3-like › Smr domain › Smr domain 0.51 33.0 3.44e-01 78.5% 72.9%
3187395 3636.1.1.0 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.51 36.0 2.83e-01 73.4% 100.0%
3835200 3556.1.1.0 ↗ a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 0.51 39.0 3.38e-01 83.5% 66.2%
3854483 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 40.0 3.25e-01 84.8% 98.7%
3435075 1.1.9.4 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA 0.51 39.0 2.88e-01 83.5% 46.0%
3615081 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 38.0 3.07e-01 81.0% 82.5%
4024931 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 35.0 2.84e-01 72.2% 93.5%
3232310 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 34.0 3.25e-01 72.2% 57.9%
3620120 11.2.1.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.51 35.0 3.01e-01 74.7% 100.0%
4988477 2003.1.5.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 0.51 36.0 2.57e-01 77.2% 89.6%
4931291 2003.1.5.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.50 37.0 2.80e-01 78.5% 77.5%