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envelope_protein_E1
Euk-VirEquine_hepacivirus_JPN3_JAPAN_2013
envelope_protein_E1__YP_009325383__Equine_hepacivirus_JPN3_JAPAN_2013__1416349
Identity
- Accession:
- YP_009325383 ↗
- Protein ID:
- envelope_protein_E1
- Kingdom:
- euk
Quality
74.0
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Flasuviricetes›
Amarillovirales›
Flaviviridae›
Hepacivirus›
Equine_hepacivirus_JPN3/JAPAN/2013
TaxID: 1416349
Cluster
View cluster (24 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-54_96-112
Domain cluster:
rep: envelope_protein_E1__YP_009684355__Guereza_hepacivirus__1354498__D31-77_120-138
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01539.23 best | HCV_env | 39.6 | 6.50e-10 | 94.4% | 29.5% |
D2
medium
residues 55-95_113-188
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01539.23 best | HCV_env | 35.9 | 9.00e-09 | 98.3% | 66.8% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.68 | 26.0 | 3.20e-01 | 99.1% | 51.9% |
| 6d5xA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.52 | 43.0 | 4.05e-01 | 100.0% | 72.8% |
| 1wvtA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.51 | 43.0 | 4.00e-01 | 97.4% | 73.0% |
| 3zc0D00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 43.0 | 3.59e-01 | 89.7% | 63.1% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3653311 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.55 | 35.0 | 3.41e-01 | 94.9% | 55.6% |
| 4274219 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.53 | 27.0 | 2.71e-01 | 100.0% | 45.0% |