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envelope_protein_E1

Euk-Vir

Hepacivirus_B

envelope_protein_E1__YP_009678985__Hepacivirus_B__2008762

Identity

Accession:
YP_009678985 ↗
Protein ID:
envelope_protein_E1
Kingdom:
euk

Quality

75.7 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Flasuviricetes› Amarillovirales› Flaviviridae› Hepacivirus› Hepacivirus_platyrrhini

TaxID: 2008762

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 62-101_119-191
PDB
Domain cluster: rep: envelope_protein_E1__YP_009325383__Equine_hepacivirus_JPN3_JAPAN_2013__1416349__D55-95_113-188
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01539.23 best HCV_env 25.3 1.50e-05 99.1% 63.7%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3982121 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.53 37.0 3.22e-01 72.6% 82.3%
D2 medium residues 1-58_102-118
PDB
Domain cluster: rep: envelope_protein_E1__YP_009684355__Guereza_hepacivirus__1354498__D31-77_120-138
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.63 25.0 3.27e-01 92.0% 60.5%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 29.0 3.06e-01 73.3% 58.8%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3058711 6042.1.1.1 ↗ beta duplicates or obligate multimers › N-terminal domain of HCV E1 › N-terminal domain of HCV E1 › N-terminal domain of HCV E1 › HCV_env 0.79 58.0 6.22e-01 77.3% 93.8%
4968629 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 26.0 3.06e-01 92.0% 46.3%
3718568 304.102.1.0 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase 0.62 43.0 3.08e-01 72.0% 32.7%