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envelope_protein_E1

Euk-Vir

Hepacivirus_F

envelope_protein_E1__YP_009678995__Hepacivirus_F__2008765

Identity

Accession:
YP_009678995 ↗
Protein ID:
envelope_protein_E1
Kingdom:
euk

Quality

64.5 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Flasuviricetes› Amarillovirales› Flaviviridae› Hepacivirus› Hepacivirus_myodae

TaxID: 2008765

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-113
PDB
Domain cluster: rep: putative_E1_protein__YP_007697649_putative_E1_protein__Equine_pegivirus_1__1307803__D1-119
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01539.23 best HCV_env 44.2 2.50e-11 98.2% 55.3%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ysyA00 1.10.8.370 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › nsp7 replicase 0.66 30.0 3.41e-01 77.9% 54.1%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 33.0 4.30e-01 77.0% 93.1%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.64 28.0 3.73e-01 75.2% 78.6%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.61 29.0 3.50e-01 73.5% 67.6%
6nwmA01 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.59 34.0 3.08e-01 82.3% 40.0%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.59 31.0 3.92e-01 77.9% 89.1%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 27.0 3.34e-01 72.6% 67.1%
4jcwA02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.56 34.0 3.77e-01 87.6% 75.6%
4i8oA03 1.10.8.1130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain 0.54 24.0 3.02e-01 81.4% 65.7%
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 37.0 3.48e-01 76.1% 99.3%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4987553 140.1.1.7 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 0.67 37.0 3.56e-01 79.6% 47.2%
3519121 101.1.2.92 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.64 28.0 2.93e-01 76.1% 41.8%
1176726 4325.1.1.2 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › P53_C 0.61 29.0 3.52e-01 74.3% 67.6%
3921143 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 40.0 3.62e-01 74.3% 88.0%
4944516 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 38.0 3.61e-01 70.8% 97.8%
1770995 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.53 39.0 3.23e-01 76.1% 100.0%
3420078 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.52 36.0 2.24e-01 70.8% 48.6%
5068533 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 36.0 3.44e-01 70.8% 100.0%
3247908 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 30.0 3.52e-01 84.1% 85.3%
4947498 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 36.0 3.47e-01 74.3% 95.6%
5049349 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 35.0 3.19e-01 72.6% 92.3%
D2 medium residues 114-173
PDB