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envelope_protein_E2
Euk-VirEquine_hepacivirus_JPN3_JAPAN_2013
envelope_protein_E2__YP_009325384__Equine_hepacivirus_JPN3_JAPAN_2013__1416349
Identity
- Accession:
- YP_009325384 ↗
- Protein ID:
- envelope_protein_E2
- Kingdom:
- euk
Quality
66.5
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Flasuviricetes›
Amarillovirales›
Flaviviridae›
Hepacivirus›
Equine_hepacivirus_JPN3/JAPAN/2013
TaxID: 1416349
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 41-54_71-152_187-237
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01560.23 best | HCV_NS1 | 70.6 | 1.40e-19 | 63.9% | 24.4% |
| PF01560.23 | HCV_NS1 | 46.5 | 2.90e-12 | 36.7% | 15.1% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3o27B00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.52 | 22.0 | 3.21e-01 | 83.0% | 96.5% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2418935 | 11.30.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › HCV envelope glycoprotein E2 › HCV envelope glycoprotein E2 › HCV_NS1 | 0.85 | 79.0 | 6.60e-01 | 97.3% | 97.0% |
| 3932040 | 79.1.1.18 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 | 0.62 | 22.0 | 2.95e-01 | 97.3% | 55.0% |
| 4928258 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.61 | 22.0 | 2.91e-01 | 88.4% | 56.6% |
| 4121218 | 387.1.1.24 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › Toxin_35 | 0.57 | 21.0 | 3.34e-01 | 93.9% | 87.3% |
| 3518759 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.54 | 40.0 | 2.94e-01 | 77.6% | 55.3% |
| 3556744 | 101.1.2.79 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 | 0.51 | 26.0 | 3.56e-01 | 93.2% | 96.0% |
D2
medium
residues 295-334
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4rg9B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.79 | 55.0 | 3.59e-01 | 75.0% | 18.0% |
| 3k59A06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.78 | 63.0 | 6.01e-01 | 92.5% | 76.6% |
| 2xkoC02 | 6.10.250.870 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.78 | 61.0 | 6.26e-01 | 90.0% | 94.6% |
| 3dkqA02 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.74 | 59.0 | 5.68e-01 | 95.0% | 78.7% |
| 1d2mA03 | 6.10.140.240 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 62.0 | 5.31e-01 | 100.0% | 59.1% |
| 1yzmA00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.73 | 56.0 | 5.46e-01 | 95.0% | 78.3% |
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.72 | 56.0 | 5.27e-01 | 95.0% | 70.6% |
| 4uijA00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.69 | 52.0 | 3.90e-01 | 85.0% | 31.7% |
| 2gd5A00 | 6.10.140.1230 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 56.0 | 3.87e-01 | 95.0% | 35.2% |
| 2j5iA02 | 6.10.250.2850 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.68 | 50.0 | 5.11e-01 | 92.5% | 84.2% |
| 1gp8A00 | 4.10.810.10 | Few Secondary Structures › Irregular › Virus Scaffolding Protein; Chain A › Virus Scaffolding Protein; Chain A | 0.64 | 49.0 | 4.97e-01 | 97.5% | 92.5% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4640528 | 4146.1.1.0 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like | 0.76 | 60.0 | 6.01e-01 | 95.0% | 90.0% |
| 3213282 | 616.1.1.21 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › DUF4473 | 0.72 | 61.0 | 5.06e-01 | 100.0% | 70.7% |
| 4419795 | 192.11.1.1 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR | 0.69 | 54.0 | 5.46e-01 | 95.0% | 90.0% |