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envelope_protein_E

Euk-Vir

Lammi_virus

envelope_protein_E__YP_009268588__Lammi_virus__649187

Identity

Accession:: YP_009268588 ↗
Protein ID:: envelope_protein_E
Kingdom:: euk

Quality

77.1 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Flasuviricetes› Amarillovirales› Flaviviridae› Lammi_virus

TaxID: 649187

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-52_131-196_282-294

PDB

Domain cluster: rep: uncovered_polypeptide_truncated_polyprotein__YP_006485886_0-792__Murray_Valley_encephalitis_virus__11079__D299-336_439-487_569-589

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00869.26 best	Flavi_glycoprot	50.8	2.00e-13	39.8%	15.0%

D2 high residues 55-128_198-265

PDB

Domain cluster: rep: envelope_protein_E__YP_009227198__Zika_virus__64320__D55-128_231-256

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00869.26 best	Flavi_glycoprot	80.3	2.10e-22	53.5%	24.3%
PF00869.26	Flavi_glycoprot	54.4	1.60e-14	50.0%	23.0%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ok8A03	3.30.387.10	Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 3 › Viral Envelope Glycoprotein, domain 3	0.98	55.0	7.53e-01	86.6%	100.0%
1okeB02	3.30.67.10	Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2	0.86	42.0	6.00e-01	100.0%	92.2%
6epkA02	3.30.67.10	Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2	0.85	38.0	5.71e-01	100.0%	91.5%
3p54A02	3.30.67.10	Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2	0.84	38.0	5.64e-01	100.0%	91.5%
6j5cA02	3.30.67.10	Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2	0.78	42.0	5.60e-01	100.0%	92.8%
1u2zA02	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.61	29.0	2.65e-01	71.8%	35.6%
6fdfA01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.56	34.0	3.02e-01	85.2%	43.6%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4861488	5090.1.1.1 ↗	beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Flavi_glycoprot	0.97	94.0	7.01e-01	100.0%	70.9%
2330240	5090.1.1.1 ↗	beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Flavi_glycoprot	0.96	93.0	6.92e-01	100.0%	68.6%
1839942	5090.1.1.5 ↗	beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Phlebovirus_G2	0.74	68.0	5.09e-01	100.0%	65.1%
2772148	5090.1.1.5 ↗	beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Phlebovirus_G2	0.69	62.0	4.74e-01	100.0%	66.4%
2531649	5090.1.1.5 ↗	beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Phlebovirus_G2	0.68	62.0	4.74e-01	100.0%	68.6%
3938676	5090.1.1.8 ↗	beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF	0.66	60.0	4.41e-01	100.0%	65.1%
3938228	5090.1.1.8 ↗	beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF	0.64	56.0	4.21e-01	95.8%	64.1%
3694580	219.1.1.3 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH	0.52	38.0	2.83e-01	76.1%	96.1%

D3 high residues 308-395

PDB

Domain cluster: rep: envelope_protein__YP_009163750__Spanish_goat_encephalitis_virus__1691889__D312-394

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02832.23 best	Flavi_glycop_C	95.9	1.80e-27	100.0%	91.8%

D4 high residues 442-498

PDB

Domain cluster: rep: envelope_protein_E__YP_004734464_envelope_protein_E__Tembusu_virus__64293__D437-501

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF21659.3 best	Flavi_E_stem	54.4	1.90e-14	89.5%	53.7%