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envelope_protein_E

Euk-Vir

Nakiwogo_virus

envelope_protein_E__YP_009268604__Nakiwogo_virus__667516

Identity

Accession:
YP_009268604 ↗
Protein ID:
envelope_protein_E
Kingdom:
euk

Quality

73.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-47_126-182_244-259
PDB
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ojdH01 2.60.98.60 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 0.77 71.0 6.10e-01 100.0% 81.1%
1rerA01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.76 70.0 6.61e-01 100.0% 92.1%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.67 47.0 3.88e-01 72.9% 86.4%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.62 36.0 3.87e-01 85.0% 67.0%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.61 51.0 4.21e-01 88.8% 75.8%
3tw6D02 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.61 39.0 4.52e-01 79.4% 92.1%
2xu8A00 3.90.70.190 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Domain of unknown function (DUF5086) 0.60 39.0 3.83e-01 94.4% 61.2%
1y0gA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.59 49.0 4.24e-01 90.7% 83.4%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 37.0 4.35e-01 99.1% 97.1%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 47.0 4.44e-01 92.5% 73.3%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.57 50.0 4.44e-01 95.3% 94.0%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.56 49.0 4.17e-01 95.3% 81.2%
2f3xA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 40.0 3.64e-01 74.8% 80.4%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.55 44.0 4.26e-01 87.9% 87.2%
1h54B01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.55 47.0 3.62e-01 97.2% 87.7%
2gvhB02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 39.0 3.80e-01 72.9% 97.4%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.55 37.0 4.14e-01 80.4% 89.3%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 44.0 4.17e-01 92.5% 72.5%
3hpeA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.54 44.0 3.94e-01 91.6% 81.7%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.54 41.0 4.21e-01 78.5% 97.0%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 4.18e-01 92.5% 71.9%
1z6bA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 39.0 3.51e-01 74.8% 88.0%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.54 31.0 3.43e-01 97.2% 70.6%
4jhyA00 3.30.530.80 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.54 38.0 3.39e-01 73.8% 75.6%
4e3eA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 47.0 3.25e-01 97.2% 62.7%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 4.18e-01 93.5% 88.7%
4c47A01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.52 46.0 4.43e-01 96.3% 97.5%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 4.10e-01 94.4% 73.1%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.52 44.0 3.92e-01 93.5% 83.9%
4e9kA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.51 46.0 3.56e-01 100.0% 97.1%
4ufcA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.51 45.0 3.20e-01 99.1% 50.3%
2hboA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 37.0 3.46e-01 76.6% 88.7%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 41.0 3.89e-01 91.6% 74.8%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 42.0 3.90e-01 92.5% 71.7%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3375447 274.1.1.46 a+b two layers › Pili subunits › Pili subunits › Pili subunits › CcmF_C 0.71 62.0 6.32e-01 100.0% 96.2%
4338913 327.16.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin 0.69 49.0 3.77e-01 73.8% 61.7%
None 0.67 47.0 3.28e-01 72.0% 47.0%
3972818 327.16.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin 0.66 47.0 3.54e-01 75.7% 57.4%
3250601 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.64 45.0 3.17e-01 72.0% 52.8%
3278704 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.63 39.0 4.45e-01 89.7% 83.7%
3486144 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.63 44.0 3.06e-01 71.0% 53.7%
5053224 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 35.0 4.39e-01 88.8% 95.0%
3281637 9.5.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.58 51.0 4.21e-01 95.3% 77.3%
2141638 9.5.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.57 50.0 4.25e-01 95.3% 83.5%
4366777 5.1.5.205 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF27482 0.57 41.0 2.84e-01 91.6% 22.2%
4075485 11.1.1.649 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › BPTA 0.57 39.0 3.37e-01 72.0% 100.0%
864 9.5.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.56 49.0 4.17e-01 95.3% 81.2%
3602505 3454.1.1.0 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.56 49.0 4.87e-01 100.0% 89.6%
3933721 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.56 51.0 4.41e-01 99.1% 93.3%
3628862 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 37.0 2.93e-01 91.6% 32.9%
None 0.55 39.0 2.80e-01 72.0% 47.7%
4195832 9.1.1.24 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.55 43.0 4.10e-01 91.6% 70.8%
3487462 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 45.0 4.23e-01 92.5% 73.8%
820 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.55 44.0 4.17e-01 92.5% 72.5%
3966764 9.5.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.54 44.0 3.89e-01 91.6% 81.8%
4046583 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.54 45.0 4.24e-01 92.5% 74.6%
3969815 4210.1.1.5 a+b two layers › WGR domain › WGR domain › WGR domain › PA4575 0.54 36.0 3.76e-01 90.7% 73.0%
3468093 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.54 34.0 3.53e-01 88.8% 68.4%
818 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.54 44.0 4.19e-01 93.5% 74.0%
4668044 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.54 46.0 4.27e-01 93.5% 89.5%
4927380 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.53 46.0 3.53e-01 97.2% 80.4%
3705431 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 37.0 3.67e-01 96.3% 67.0%
4288691 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.53 39.0 3.66e-01 77.6% 87.3%
3941180 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 3.58e-01 73.8% 98.5%
3620732 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 48.0 4.32e-01 100.0% 81.2%
3941288 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 45.0 4.08e-01 93.5% 74.5%
3258377 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.53 37.0 4.00e-01 92.5% 87.8%
4614038 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.52 45.0 4.18e-01 93.5% 88.7%
4977196 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.52 38.0 2.95e-01 75.7% 98.0%
3996508 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 44.0 4.02e-01 94.4% 77.0%
3624142 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.52 44.0 4.04e-01 93.5% 72.1%
3939474 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 44.0 3.99e-01 93.5% 77.2%
3726361 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 35.0 3.79e-01 73.8% 82.2%
3894563 9.1.1.24 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.52 42.0 4.03e-01 91.6% 75.0%
3520059 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.51 44.0 4.24e-01 93.5% 88.3%
3925021 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.51 43.0 4.02e-01 93.5% 74.1%
3415072 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.51 42.0 3.86e-01 92.5% 68.6%
3813657 220.1.1.172 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PRMT_N 0.51 36.0 3.62e-01 73.8% 100.0%
4960626 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.51 41.0 3.84e-01 91.6% 87.1%
3810646 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.50 41.0 2.87e-01 89.7% 38.8%
2438877 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.50 42.0 3.90e-01 92.5% 71.7%
D2 high residues 52-124_192-240
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00869.26 best Flavi_glycoprot 37.2 2.80e-09 82.0% 22.7%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ok8A03 3.30.387.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 3 › Viral Envelope Glycoprotein, domain 3 0.85 56.0 6.77e-01 87.7% 100.0%
3fn5B00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.58 33.0 3.05e-01 95.1% 41.1%
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 37.0 4.04e-01 91.0% 92.9%
1nxiA00 3.30.70.970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like 0.51 37.0 3.61e-01 91.0% 68.2%
1pn2B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 34.0 3.15e-01 74.6% 54.7%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2330240 5090.1.1.1 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Flavi_glycoprot 0.81 75.0 5.50e-01 100.0% 68.9%
4861488 5090.1.1.1 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Flavi_glycoprot 0.78 71.0 5.29e-01 100.0% 71.2%
1839942 5090.1.1.5 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Phlebovirus_G2 0.69 61.0 4.48e-01 99.2% 66.6%
2531649 5090.1.1.5 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Phlebovirus_G2 0.66 58.0 4.27e-01 98.4% 68.3%
3626193 5090.1.1.8 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF 0.65 58.0 4.12e-01 100.0% 65.3%
3938228 5090.1.1.8 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF 0.60 53.0 3.91e-01 100.0% 66.4%
3597124 10.15.1.1 beta sandwiches › jelly-roll › Smp-1-like › Smp-1-like › DUF1935 0.54 36.0 3.60e-01 91.8% 64.6%
3225950 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.52 36.0 3.72e-01 91.0% 74.2%
D3 high residues 272-348
PDB
D4 medium residues 354-424
PDB