←Back to structures
envelope_protein_M
Euk-VirAfrican_pouched_rat_arterivirus
envelope_protein_M__YP_009118968__African_pouched_rat_arterivirus__1965064
Identity
- Accession:
- YP_009118968 ↗
- Protein ID:
- envelope_protein_M
- Kingdom:
- euk
Quality
65.9
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Nidovirales›
Arteriviridae›
Lambdaarterivirus›
African_pouched_rat_arterivirus
TaxID: 1965064
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-105
D2
high
residues 113-161
Domain cluster:
rep: M_protein__YP_009824955__Zambian_malbrouck_virus_1__2682610__D98-142
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5tw4A02 | 2.30.140.20 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Penicillin-binding protein 4, C-terminal domain | 0.59 | 42.0 | 3.90e-01 | 79.6% | 95.7% |
| 3ottB02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 42.0 | 2.63e-01 | 81.6% | 22.8% |
| 5flxf00 | 6.20.50.150 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.57 | 35.0 | 3.12e-01 | 73.5% | 41.1% |
| 3qcwA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 45.0 | 3.15e-01 | 98.0% | 48.7% |
| 3gmgA00 | 3.30.70.1880 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 | 0.53 | 44.0 | 3.35e-01 | 100.0% | 59.4% |
| 3w1zC00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 42.0 | 3.26e-01 | 93.9% | 66.9% |
| 3juuA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 37.0 | 2.35e-01 | 75.5% | 22.8% |
| 4q1vA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.52 | 36.0 | 2.18e-01 | 77.6% | 13.6% |
| 1nyoA00 | 2.30.180.10 | Mainly Beta › Roll › FAS1 domain › FAS1 domain | 0.52 | 43.0 | 3.01e-01 | 93.9% | 39.3% |
| 5d2lE01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 41.0 | 3.37e-01 | 98.0% | 63.9% |
| 3igfA02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 42.0 | 3.80e-01 | 100.0% | 89.2% |
| 2wv3A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 40.0 | 3.36e-01 | 98.0% | 59.0% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3212764 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.69 | 58.0 | 5.04e-01 | 100.0% | 78.8% |
| 3696115 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.58 | 49.0 | 3.21e-01 | 98.0% | 57.6% |
| 3865117 | 10.1.1.23 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neuralized | 0.57 | 46.0 | 3.26e-01 | 100.0% | 58.9% |
| 3326962 | 3794.1.1.3 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT | 0.55 | 40.0 | 2.97e-01 | 79.6% | 88.1% |
| 3586307 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.55 | 40.0 | 3.14e-01 | 83.7% | 44.6% |
| 3629722 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 40.0 | 3.07e-01 | 83.7% | 41.4% |
| 3958320 | 304.148.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein Rv1825/MT1873 › Uncharacterized protein Rv1825/MT1873 › DUF881 | 0.54 | 41.0 | 3.28e-01 | 98.0% | 38.3% |
| 4951112 | 239.3.1.1 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin | 0.54 | 42.0 | 3.05e-01 | 85.7% | 42.5% |
| 4146515 | 304.148.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein Rv1825/MT1873 › Uncharacterized protein Rv1825/MT1873 › DUF881 | 0.53 | 43.0 | 3.28e-01 | 100.0% | 65.2% |
| 3725148 | 239.3.1.1 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin | 0.52 | 41.0 | 3.02e-01 | 85.7% | 43.8% |
| 4016013 | 239.3.1.1 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin | 0.52 | 40.0 | 3.03e-01 | 85.7% | 46.8% |
| 3490944 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.52 | 39.0 | 3.01e-01 | 91.8% | 49.7% |
| 3877994 | 239.3.1.1 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin | 0.52 | 40.0 | 2.98e-01 | 85.7% | 45.4% |
| 3594835 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.52 | 41.0 | 3.71e-01 | 93.9% | 88.0% |
| 4956929 | 319.1.1.4 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 | 0.51 | 41.0 | 3.32e-01 | 93.9% | 61.9% |
| 3699601 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.51 | 41.0 | 3.68e-01 | 95.9% | 89.3% |
| 4953310 | 231.1.2.3 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › CbiZ | 0.50 | 34.0 | 2.35e-01 | 75.5% | 55.3% |
| 3899914 | 239.3.1.1 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin | 0.50 | 42.0 | 3.09e-01 | 93.9% | 51.9% |