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envelope_protein

Euk-Vir

Simian_foamy_virus

envelope_protein__NP_056804__Simian_foamy_virus__11642

Identity

Accession:: NP_056804 ↗
Protein ID:: envelope_protein
Kingdom:: euk

Quality

59.5 mean pLDDT

Taxonomy

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Retroviridae› Simian_foamy_virus

TaxID: 11642

Cluster

View cluster (13 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-97

PDB

D2 medium residues 243-313_352-397

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03408.21 best	Foamy_virus_ENV	88.8	3.00e-25	63.2%	7.2%
PF03408.21	Foamy_virus_ENV	59.8	1.80e-16	42.7%	4.9%

D3 medium residues 715-797

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03408.21 best	Foamy_virus_ENV	143.9	7.00e-42	100.0%	8.3%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2bisA01	3.40.50.2000	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B;	0.63	30.0	2.11e-01	86.7%	14.2%
2retA00	3.30.1300.30	Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like	0.62	32.0	3.23e-01	90.4%	47.6%
3ga2A00	3.30.2170.10	Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily	0.62	37.0	2.71e-01	98.8%	21.2%
1wznA02	2.20.25.110	Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases	0.58	31.0	3.60e-01	90.4%	75.0%
3bxoA02	2.20.130.10	Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains	0.57	33.0	3.75e-01	92.8%	79.7%
4e5xG00	2.60.40.3530	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.56	35.0	3.32e-01	100.0%	52.5%
1pfoA02	3.30.1040.20	Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A ›	0.55	28.0	3.47e-01	88.0%	79.2%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3970193	319.3.1.0 ↗	beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ	0.70	29.0	2.78e-01	86.7%	32.6%
3237142	5093.1.1.0 ↗	a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	0.68	61.0	4.07e-01	100.0%	79.1%
4192670	5093.1.1.5 ↗	a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Gypsy	0.62	55.0	3.65e-01	100.0%	40.3%
1883810	5093.1.1.1 ↗	a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Fusion_gly	0.60	51.0	3.69e-01	100.0%	34.6%
4643563	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.59	33.0	3.30e-01	92.8%	50.0%
3425790	243.3.1.19 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615	0.58	33.0	3.24e-01	94.0%	47.4%
3484327	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.53	37.0	3.39e-01	91.6%	53.0%
3212332	243.1.1.85 ↗	a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26531	0.50	34.0	2.92e-01	91.6%	44.6%

D4 medium residues 868-948

PDB