←Back to structures
envelope_protein
Euk-VirCondylorrhiza_vestigialis_MNPV
envelope_protein__YP_009118603__Condylorrhiza_vestigialis_MNPV__1592576
Identity
- Accession:
- YP_009118603 ↗
- Protein ID:
- envelope_protein
- Kingdom:
- euk
Quality
72.8
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Condylorrhiza_vestigialis_mutiple_nucleopolyhedrovirus
TaxID: 1592576
Cluster
View cluster (44 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 27-43_309-397_479-509
Domain cluster:
rep: envelope_fusion_protein__YP_009345747__Mythimna_unipuncta_granulovirus_B__2169746__D27-50_306-403_477-502
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12259.14 best | Baculo_F | 55.2 | 7.30e-15 | 78.8% | 14.4% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ztmA01 | 2.40.490.10 | Mainly Beta › Beta Barrel › Head and neck region of the ectodomain of NDV fusion glycoprotein › Newcastle disease virus like domain | 0.71 | 48.0 | 5.32e-01 | 90.5% | 86.1% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3407194 | 5093.1.1.2 ↗ | a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Baculo_F | 0.80 | 70.0 | 4.93e-01 | 93.4% | 99.0% |
| 3738365 | 2.1.1.128 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Arb1 | 0.51 | 32.0 | 3.32e-01 | 89.8% | 66.2% |
| 184723 | 4294.1.1.2 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p | 0.51 | 28.0 | 3.49e-01 | 77.4% | 85.4% |
D2
medium
residues 44-112_143-240
D3
medium
residues 241-308
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s7mA03 | 2.20.25.140 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.64 | 28.0 | 3.95e-01 | 92.6% | 96.4% |
| 4pkcC00 | 6.20.90.20 | Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit | 0.59 | 28.0 | 3.42e-01 | 75.0% | 68.3% |
| 1tr8A01 | 2.20.70.30 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain | 0.57 | 31.0 | 3.47e-01 | 88.2% | 69.2% |
| 2azeB00 | 6.10.250.540 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.56 | 32.0 | 2.79e-01 | 95.6% | 36.6% |
| 1eg7A02 | 3.30.1510.10 | Alpha Beta › 2-Layer Sandwich › Domain 2, N(10)-formyltetrahydrofolate synthetase › Domain 2, N(10)-formyltetrahydrofolate synthetase | 0.55 | 46.0 | 3.95e-01 | 100.0% | 84.0% |
| 1xexB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 37.0 | 2.89e-01 | 100.0% | 30.4% |
| 2lfvA00 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.53 | 31.0 | 2.75e-01 | 92.6% | 34.9% |
| 5h7kA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 41.0 | 2.98e-01 | 95.6% | 88.0% |
| 4oc8A01 | 2.30.280.20 | Mainly Beta › Roll › PUA domain-like › | 0.51 | 43.0 | 3.10e-01 | 97.1% | 39.5% |
| 3f1jA00 | 2.70.20.40 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Borna disease virus, matrix protein | 0.51 | 40.0 | 3.24e-01 | 98.5% | 42.9% |
| 5axgA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.50 | 42.0 | 3.49e-01 | 95.6% | 88.9% |
| 1u2eA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 37.0 | 2.56e-01 | 82.4% | 72.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4526778 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.59 | 35.0 | 4.00e-01 | 92.6% | 88.9% |
| 5047479 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 42.0 | 3.67e-01 | 82.4% | 66.4% |
| 4874840 | 704.1.1.1 ↗ | beta complex topology › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › CoV_nucleocap | 0.54 | 33.0 | 3.11e-01 | 79.4% | 47.7% |
| 4483616 | 2004.1.1.61 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FTHFS | 0.53 | 43.0 | 2.65e-01 | 100.0% | 18.2% |
| 2387844 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.53 | 43.0 | 2.63e-01 | 100.0% | 18.2% |
| 3989573 | 601.14.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin | 0.52 | 42.0 | 3.05e-01 | 92.6% | 60.9% |
| 3440530 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.52 | 27.0 | 2.99e-01 | 95.6% | 58.2% |
| 3991702 | 389.2.1.3 ↗ | few secondary structure elements › EGF-like › Serine protease inhibitors › Serine protease inhibitors › TIL_2 | 0.52 | 33.0 | 3.78e-01 | 73.5% | 91.7% |
| 4928781 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.51 | 41.0 | 2.68e-01 | 95.6% | 23.0% |
| 3946135 | 7542.1.1.4 ↗ | a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Peptidase_S66C | 0.50 | 35.0 | 2.89e-01 | 72.1% | 59.2% |
| 1558819 | 1.1.9.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › RE_AspBHI_N | 0.50 | 41.0 | 2.98e-01 | 97.1% | 40.4% |
D4
medium
residues 398-478_510-551
Domain cluster:
rep: efp__YP_004376238__Clostera_anachoreta_granulovirus__283675__D22-47_387-525
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12259.14 best | Baculo_F | 26.9 | 2.70e-06 | 95.1% | 12.6% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8h68A01 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.54 | 38.0 | 3.11e-01 | 72.4% | 70.9% |
ECOD (1)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3407194 | 5093.1.1.2 ↗ | a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Baculo_F | 0.67 | 50.0 | 3.39e-01 | 92.7% | 23.8% |