←Back to structures

essential_component_of_virus_entry_complex

Euk-Vir

Murmansk_poxvirus

essential_component_of_virus_entry_complex__YP_009408278__Murmansk_poxvirus__2025359

Identity

Accession:
YP_009408278 ↗
Protein ID:
essential_component_of_virus_entry_complex
Kingdom:
euk

Quality

75.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Centapoxvirus› Murmansk_poxvirus

TaxID: 2025359

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 96-159
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03356.22 best Pox_LP_H2 114.4 8.20e-33 100.0% 34.0%
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vq8N00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.61 53.0 3.86e-01 100.0% 86.6%
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.60 36.0 4.04e-01 76.6% 86.0%
3hrgA01 3.30.420.250 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, N-terminal domain 0.60 45.0 3.57e-01 95.3% 37.1%
1vhxB00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.59 44.0 3.54e-01 95.3% 38.4%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.59 32.0 3.19e-01 76.6% 46.3%
4hslA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 47.0 3.56e-01 92.2% 67.5%
4af1A02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.58 49.0 3.99e-01 96.9% 57.1%
1ilyA00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.58 47.0 4.24e-01 93.8% 65.6%
2qv8A00 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.58 45.0 3.52e-01 85.9% 79.9%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.57 35.0 3.11e-01 85.9% 41.1%
4hn7A00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 46.0 4.23e-01 90.6% 89.4%
2xzmK00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.55 46.0 3.70e-01 98.4% 45.0%
3u3gA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 45.0 3.62e-01 98.4% 43.6%
4gniB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 44.0 3.47e-01 96.9% 51.0%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.53 46.0 4.37e-01 100.0% 82.7%
6gfaA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 45.0 3.52e-01 98.4% 51.4%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 39.0 3.22e-01 100.0% 41.8%
3nqpA00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 45.0 2.72e-01 98.4% 50.0%
1jssA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 45.0 3.27e-01 98.4% 88.4%
3dsmA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.78e-01 96.9% 22.3%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 38.0 3.16e-01 95.3% 43.3%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.55e-01 90.6% 74.5%
2v73A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.20e-01 100.0% 40.4%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 37.0 3.16e-01 95.3% 45.1%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 37.0 3.11e-01 100.0% 41.1%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.51 42.0 3.34e-01 98.4% 74.7%
1kw3B02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 41.0 3.30e-01 100.0% 85.7%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 36.0 3.08e-01 96.9% 43.4%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995755 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 41.0 4.62e-01 70.3% 80.0%
4026577 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.64 51.0 5.45e-01 96.9% 100.0%
4017732 220.1.1.202 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.62 45.0 3.44e-01 87.5% 32.7%
3707098 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 34.0 3.25e-01 95.3% 44.0%
3611854 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.61 50.0 3.76e-01 98.4% 71.9%
868467 274.1.1.13 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH 0.58 44.0 3.47e-01 82.8% 73.9%
4975312 2484.2.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.57 48.0 4.27e-01 96.9% 100.0%
3650304 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.56 36.0 3.74e-01 90.6% 70.0%
5051613 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 45.0 3.77e-01 92.2% 57.6%
5047706 210.1.2.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT 0.56 40.0 2.78e-01 81.2% 89.6%
4463778 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.55 42.0 3.45e-01 100.0% 45.0%
3723416 212.1.1.12 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › UPF0029 0.54 40.0 3.22e-01 81.2% 52.2%
3388280 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.53 38.0 3.21e-01 93.8% 41.7%
3261239 2.6.1.1 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.53 44.0 3.40e-01 98.4% 59.4%
3789224 633.23.1.9 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.53 43.0 3.08e-01 93.8% 29.3%
3737235 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.52 31.0 3.19e-01 93.8% 56.9%
4516295 570.1.1.1 ↗ alpha arrays › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › SecA_PP_bind 0.52 36.0 2.98e-01 87.5% 38.4%
3643893 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.51 39.0 3.68e-01 100.0% 67.5%
4978604 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 41.0 3.24e-01 95.3% 69.0%
5073666 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 41.0 2.70e-01 95.3% 37.3%
4027836 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.51 38.0 2.96e-01 93.8% 34.7%
3276783 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 40.0 3.22e-01 95.3% 42.2%
5044748 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 3.10e-01 93.8% 45.7%
7390 219.1.1.6 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.51 39.0 2.63e-01 87.5% 79.6%
4011287 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.50 38.0 3.79e-01 100.0% 78.6%
2878151 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.50 37.0 3.11e-01 100.0% 42.1%
4064214 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.50 38.0 3.83e-01 96.9% 83.1%
D2 medium residues 11-91
PDB
Domain cluster: rep: entry_fusion_imv_membrane_protein__YP_009268791__Pteropox_virus__1873698__D1-73
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03356.22 best Pox_LP_H2 99.8 2.40e-28 100.0% 42.0%