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evelope_glycoprotein_H

Euk-Vir

Ateline_alphaherpesvirus_1

evelope_glycoprotein_H__YP_009361916__Ateline_alphaherpesvirus_1__35243

Identity

Accession:
YP_009361916 ↗
Protein ID:
evelope_glycoprotein_H
Kingdom:
euk

Quality

75.4 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Ateline_alphaherpesvirus_1

TaxID: 35243

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-106
PDB
D2 medium residues 125-173_218-343_373-389
PDB
Domain cluster: rep: envelope_glycoprotein_H__YP_009042084__Fruit_bat_alphaherpesvirus_1__1343901__D163-212_227-348_450-466
D3 medium residues 174-217_344-372_390-416_440-475
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ro3A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 31.0 3.00e-01 89.7% 50.3%
4g09A03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.50 21.0 3.02e-01 87.5% 89.1%
D4 medium residues 476-594
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 59.0 5.40e-01 89.1% 74.7%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.69 48.0 4.89e-01 71.4% 82.1%
2l7nA00 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.68 48.0 4.23e-01 72.3% 56.0%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.68 41.0 4.41e-01 72.3% 69.6%
8amzT01 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.67 52.0 3.97e-01 86.6% 36.7%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.67 47.0 5.17e-01 72.3% 92.5%
3cqcB01 1.20.58.1380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 45.0 5.10e-01 99.2% 98.9%
2uubT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.63 39.0 4.18e-01 72.3% 72.7%
6a3kA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.62 43.0 4.22e-01 70.6% 75.2%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 44.0 4.17e-01 80.7% 61.1%
3fnbA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.60 45.0 4.59e-01 84.9% 82.5%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.58 44.0 4.24e-01 80.7% 84.9%
2vixA03 1.20.1280.240 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.56 38.0 3.95e-01 84.9% 74.3%
3gi8C00 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.53 45.0 3.09e-01 92.4% 89.9%
4i4cB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 45.0 3.21e-01 100.0% 86.9%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3509826 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.74 53.0 5.19e-01 73.9% 90.8%
3794795 603.1.1.3 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE 0.73 50.0 5.40e-01 70.6% 94.0%
3481781 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.73 46.0 5.40e-01 71.4% 93.8%
3687894 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 60.0 3.90e-01 89.1% 21.0%
3969668 3758.2.1.1 ↗ alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB 0.65 45.0 3.69e-01 71.4% 81.3%
3991875 604.13.1.0 ↗ alpha bundles › Spectrin repeat-like › USP8 N-terminal domain-like › USP8 N-terminal domain-like 0.65 49.0 5.13e-01 88.2% 87.3%
3371542 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 43.0 3.93e-01 89.9% 50.0%
3796589 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.64 47.0 5.07e-01 86.6% 91.0%
3497415 109.4.1.292 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3a_PCI_TPR-like 0.61 48.0 3.31e-01 85.7% 24.5%
3593023 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 46.0 3.44e-01 89.1% 30.5%
3776919 109.4.1.1749 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_ECM29 0.59 48.0 4.01e-01 89.1% 52.7%
4016562 109.4.1.143 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ric8 0.59 49.0 3.34e-01 95.8% 23.0%
3456183 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 42.0 4.53e-01 83.2% 94.0%
3624667 5001.1.1.63 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srab 0.56 48.0 3.57e-01 94.1% 81.9%
5039732 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.56 39.0 4.02e-01 72.3% 93.8%
3713949 109.6.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF_N 0.55 45.0 3.45e-01 89.1% 49.3%
None — 0.52 46.0 3.24e-01 100.0% 82.4%
3612510 171.1.1.0 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.52 40.0 3.17e-01 83.2% 62.7%
3231735 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.51 41.0 3.61e-01 85.7% 82.7%
3937339 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.51 40.0 3.60e-01 83.2% 82.4%
3619928 189.1.1.3 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › Plexin_cytopl 0.51 44.0 3.03e-01 96.6% 47.0%
5042141 3352.1.1.0 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.51 45.0 3.30e-01 100.0% 46.7%
3518148 189.1.1.3 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › Plexin_cytopl 0.51 44.0 3.03e-01 96.6% 80.0%
3592552 171.1.1.0 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.50 39.0 3.24e-01 82.4% 63.3%
D5 medium residues 595-670
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f1xA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.62 46.0 3.69e-01 78.9% 86.6%
2jdiH02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.61 29.0 3.91e-01 75.0% 85.7%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.60 42.0 4.62e-01 80.3% 90.2%
1irxA04 1.10.10.770 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 44.0 3.96e-01 81.6% 93.5%
3terA00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 41.0 3.57e-01 75.0% 65.5%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.57 44.0 4.07e-01 82.9% 71.1%
1o5hA00 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.56 48.0 3.57e-01 96.1% 81.5%
2e5yA02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.56 33.0 4.19e-01 75.0% 100.0%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.56 40.0 3.87e-01 75.0% 78.8%
2b3tB01 6.10.140.1980 Special › Helix non-globular › Helix Hairpins › 0.55 34.0 3.65e-01 81.6% 72.3%
4qhpA05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.55 45.0 3.02e-01 92.1% 23.2%
1vp7A00 1.10.287.1040 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Exonuclease VII, small subunit 0.55 41.0 4.26e-01 89.5% 88.2%
1k04A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.53 38.0 3.48e-01 76.3% 56.7%
1ma1A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.53 37.0 3.96e-01 82.9% 85.9%
4iw9A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 41.0 3.62e-01 85.5% 78.8%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.52 41.0 3.54e-01 85.5% 55.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3782284 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 44.0 3.30e-01 76.3% 38.6%
3783474 604.12.1.71 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › TMD_POM152 0.61 44.0 3.89e-01 76.3% 71.3%
3173138 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.61 43.0 4.16e-01 76.3% 72.2%
4036838 192.6.1.1 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE 0.60 35.0 4.31e-01 75.0% 90.0%
3935633 1203.1.2.1 ↗ alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › ASD2 0.60 46.0 3.43e-01 81.6% 46.5%
3777869 192.13.1.2 ↗ alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like › Nexin_C 0.59 45.0 3.86e-01 81.6% 57.5%
143026 109.10.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.57 47.0 3.47e-01 97.4% 82.5%
5032045 4163.1.1.0 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.56 44.0 4.03e-01 85.5% 94.0%
4176828 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.56 40.0 4.19e-01 80.3% 82.9%
4075864 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.55 38.0 4.30e-01 72.4% 98.2%
4013672 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.53 39.0 3.62e-01 80.3% 62.0%
3308779 4982.1.1.3 ↗ alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › Tic110 0.50 40.0 3.27e-01 86.8% 58.6%
D6 medium residues 671-813
PDB
Domain cluster: rep: UL22__YP_003084400__Anatid_alphaherpesvirus_1__104388__D647-783
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17488.8 best Herpes_glycoH_C 46.0 6.00e-12 95.1% 90.8%