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fascin-like_domain_protein

Euk-Vir

Pithovirus_sibericum

fascin-like_domain_protein__YP_009001288__Pithovirus_sibericum__1450746

Identity

Accession:: YP_009001288 ↗
Protein ID:: fascin-like_domain_protein
Kingdom:: euk

Quality

77.3 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Pithoviridae› Alphapithovirus› Pithovirus_sibericum

TaxID: 1450746

Cluster

View cluster (82 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 357-476

PDB

Domain cluster: rep: AB012112.1__BAA75082.1__X__00004__D18-146

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06268.20 best	Fascin	34.2	3.30e-08	80.8%	80.6%

D2 medium residues 23-184_261-274

PDB

Domain cluster: rep: KM199771.1__AIK68527.1__Lo5R7ANS_57__00057__D358-488_526-544

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF21722.5 best	Gly_rich_2	34.4	3.40e-08	96.0%	65.2%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1lr5B00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.62	27.0	2.84e-01	100.0%	42.8%
1zx5A02	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.62	27.0	3.87e-01	100.0%	86.7%
5j7mA00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.59	28.0	3.32e-01	100.0%	63.9%
3ocpB00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.56	23.0	2.70e-01	99.4%	48.4%
4ca9A00	2.60.120.340	Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain	0.56	29.0	3.82e-01	100.0%	89.8%
6m9sD01	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.56	26.0	3.29e-01	100.0%	73.3%
2qcsB02	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.55	25.0	2.89e-01	99.4%	56.0%
2q3zA04	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.53	28.0	3.58e-01	96.0%	89.6%
3wmqA00	2.60.40.2080	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.53	29.0	3.77e-01	98.9%	97.9%
1omiA01	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.53	24.0	3.05e-01	99.4%	69.5%
2qjvA02	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.52	27.0	3.36e-01	100.0%	78.8%
4i2oA01	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.51	24.0	2.94e-01	99.4%	66.9%
4myjA04	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.50	24.0	2.84e-01	100.0%	62.8%

ECOD (20)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4028545	929.1.1.0 ↗	beta duplicates or obligate multimers › Resistin › Resistin › Resistin	0.70	30.0	4.40e-01	99.4%	92.0%
5045474	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.63	24.0	2.89e-01	100.0%	49.6%
3943625	10.12.1.8 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding	0.61	27.0	3.06e-01	100.0%	54.1%
4028878	929.1.1.0 ↗	beta duplicates or obligate multimers › Resistin › Resistin › Resistin	0.60	28.0	4.03e-01	100.0%	98.7%
3505893	10.12.1.21 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ERG2_Sigma1R	0.60	27.0	3.09e-01	100.0%	56.2%
2512620	10.12.1.39 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2	0.59	23.0	2.96e-01	100.0%	57.3%
3934054	10.4.1.1 ↗	beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB	0.55	32.0	3.86e-01	100.0%	84.9%
3923663	10.4.1.1 ↗	beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB	0.55	32.0	3.45e-01	100.0%	67.8%
4641449	10.12.1.8 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding	0.54	26.0	2.78e-01	100.0%	49.7%
4351615	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.54	30.0	3.90e-01	98.3%	98.9%
3926650	10.4.1.0 ↗	beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain	0.53	31.0	3.76e-01	100.0%	87.0%
5084091	10.1.2.183 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC	0.53	29.0	3.89e-01	96.0%	100.0%
5047474	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.52	29.0	3.85e-01	97.7%	100.0%
5077191	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.52	29.0	3.83e-01	98.9%	97.0%
3910447	10.32.1.4 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L	0.51	29.0	3.39e-01	97.7%	75.4%
3978761	10.32.1.239 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FNIII-A_GpJ	0.51	35.0	4.10e-01	99.4%	98.4%
3929714	10.4.1.1 ↗	beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB	0.51	29.0	3.40e-01	100.0%	78.4%
3825274	10.32.1.4 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L	0.51	30.0	3.11e-01	100.0%	61.2%
5012983	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.51	25.0	3.15e-01	100.0%	76.1%
4948691	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.50	29.0	3.66e-01	99.4%	98.0%

D3 medium residues 185-260

PDB

Domain cluster: rep: Fascin-like_incomplete_domain_containing_protein__YP_009483562__Pandoravirus_quercus__2107709__D207-297