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fiber-1
Euk-VirFowl_aviadenovirus_C
fiber-1__YP_004346939__Fowl_aviadenovirus_C__190063
Identity
- Accession:
- YP_004346939 ↗
- Protein ID:
- fiber-1
- Kingdom:
- euk
Quality
68.0
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Aviadenovirus›
Fowl_aviadenovirus_C
TaxID: 190063
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 90-199
Domain cluster:
rep: fiber-2__YP_008719868__Turkey_aviadenovirus_5__1408258__D78-157
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06536.17 best | Av_adeno_fibre | 34.2 | 2.60e-08 | 52.7% | 89.3% |
CATH (2)
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2327461 | 53.1.1.0 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral | 0.82 | 52.0 | 6.31e-01 | 72.7% | 97.2% |
| 2321116 | 53.1.1.0 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral | 0.80 | 49.0 | 5.69e-01 | 72.7% | 87.0% |
D2
medium
residues 215-278_348-359_391-420
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2iumA00 | 2.60.90.30 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain | 0.90 | 86.0 | 6.64e-01 | 100.0% | 96.7% |
| 2vtwA00 | 2.60.90.30 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain | 0.82 | 77.0 | 6.02e-01 | 100.0% | 94.6% |
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.80 | 37.0 | 4.91e-01 | 99.1% | 80.0% |
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 37.0 | 3.54e-01 | 93.4% | 44.4% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 33.0 | 3.85e-01 | 82.1% | 67.6% |
| 1h7zA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.64 | 58.0 | 4.77e-01 | 100.0% | 96.9% |
| 1s3rA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.62 | 30.0 | 3.98e-01 | 90.6% | 88.7% |
| 2wstA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.60 | 53.0 | 4.50e-01 | 99.1% | 96.6% |
| 2ldkA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.59 | 35.0 | 3.01e-01 | 98.1% | 35.5% |
| 2jobA00 | 3.30.160.320 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 28.0 | 2.87e-01 | 86.8% | 45.1% |
| 2vrsA03 | 2.60.90.40 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.57 | 49.0 | 4.54e-01 | 94.3% | 100.0% |
| 2cwrA00 | 2.60.40.290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 37.0 | 3.82e-01 | 78.3% | 82.5% |
| 1d6uA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.51 | 39.0 | 2.65e-01 | 81.1% | 99.5% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2834097 | 5092.1.1.5 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › AdHead_fibreRBD | 0.91 | 87.0 | 6.61e-01 | 100.0% | 95.4% |
| 185806 | 5092.1.1.5 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › AdHead_fibreRBD | 0.90 | 86.0 | 6.64e-01 | 100.0% | 96.7% |
| 2542700 | 5092.1.1.5 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › AdHead_fibreRBD | 0.90 | 86.0 | 6.49e-01 | 99.1% | 92.3% |
| 199058 | 5092.1.1.5 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › AdHead_fibreRBD | 0.82 | 77.0 | 6.02e-01 | 100.0% | 94.6% |
| 5068436 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.67 | 36.0 | 2.76e-01 | 100.0% | 23.8% |
| 4960428 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.66 | 35.0 | 2.64e-01 | 100.0% | 21.6% |
| 5021113 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 42.0 | 4.32e-01 | 78.3% | 100.0% |
| 3245466 | 11.1.1.44 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 | 0.56 | 43.0 | 4.09e-01 | 100.0% | 70.2% |
| 3514681 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.54 | 29.0 | 3.59e-01 | 96.2% | 86.7% |
| 3964535 | 310.3.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilO | 0.50 | 41.0 | 4.02e-01 | 88.7% | 82.6% |
| 3290942 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 38.0 | 3.84e-01 | 96.2% | 81.0% |
D3
medium
residues 279-347_360-390
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cwzA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 35.0 | 3.15e-01 | 100.0% | 42.3% |
| 2c2iA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 36.0 | 3.20e-01 | 99.0% | 43.6% |
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.55 | 27.0 | 3.25e-01 | 79.0% | 71.2% |
| 3hm0A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 32.0 | 3.02e-01 | 100.0% | 46.0% |
| 2bi0A01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 38.0 | 3.32e-01 | 100.0% | 48.4% |
| 3b7kB01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 35.0 | 3.13e-01 | 100.0% | 46.4% |
| 3ck1A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 32.0 | 2.91e-01 | 100.0% | 41.3% |
| 1s5uE00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 32.0 | 2.94e-01 | 100.0% | 43.4% |
| 2bi0A02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 35.0 | 3.16e-01 | 100.0% | 47.6% |
| 2essA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 31.0 | 2.83e-01 | 100.0% | 40.6% |
| 5eo4A01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 31.0 | 2.84e-01 | 100.0% | 42.4% |
| 6jqlA03 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 35.0 | 2.95e-01 | 98.0% | 39.9% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.50 | 26.0 | 3.19e-01 | 83.0% | 83.9% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5071182 | 222.1.1.1 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas | 0.59 | 36.0 | 3.35e-01 | 99.0% | 46.6% |
| 4608000 | 222.1.1.9 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N | 0.51 | 34.0 | 3.06e-01 | 100.0% | 47.1% |
| 4940126 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.51 | 34.0 | 3.22e-01 | 100.0% | 55.8% |
| 3981157 | 222.1.1.14 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MC_hydratase | 0.51 | 36.0 | 3.10e-01 | 100.0% | 44.8% |
| 1396217 | 825.1.1.2 ↗ | beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › ETX_MTX2 | 0.51 | 39.0 | 3.32e-01 | 82.0% | 92.8% |
| 3728259 | 4252.1.1.12 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 | 0.51 | 46.0 | 4.29e-01 | 100.0% | 94.4% |
| 3541127 | 2.1.1.170 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SHLD2_OB2 | 0.51 | 30.0 | 3.40e-01 | 88.0% | 76.0% |