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fiber-1

Euk-Vir

Pigeon_adenovirus_1

fiber-1__YP_009047110__Pigeon_adenovirus_1__764030

Identity

Accession:
YP_009047110 ↗
Protein ID:
fiber-1
Kingdom:
euk

Quality

63.0 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Aviadenovirus› Pigeon_adenovirus_1

TaxID: 764030

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 46-98
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s6xA01 6.20.10.20 Special › Other non-globular › Laminin › 0.81 65.0 5.97e-01 100.0% 68.1%
3s6xC03 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.76 51.0 5.77e-01 96.2% 92.5%
1v1hB00 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.73 64.0 5.17e-01 100.0% 54.5%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 30.0 2.38e-01 94.3% 21.4%
3gueA02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.54 31.0 2.45e-01 94.3% 26.6%
1usyC00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 39.0 2.64e-01 98.1% 67.2%
3g7sA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.50 39.0 2.42e-01 96.2% 79.7%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2321116 53.1.1.0 ↗ beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral 0.81 65.0 5.78e-01 100.0% 61.0%
2327461 53.1.1.0 ↗ beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral 0.79 65.0 5.88e-01 100.0% 66.7%
D2 medium residues 99-159
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v1hB00 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.74 66.0 5.57e-01 100.0% 62.4%
3s6xA01 6.20.10.20 Special › Other non-globular › Laminin › 0.73 60.0 5.77e-01 100.0% 79.7%
4gu4A01 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.62 41.0 4.54e-01 95.1% 100.0%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 33.0 2.94e-01 70.5% 40.0%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.55 40.0 2.97e-01 82.0% 58.0%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.52 36.0 2.97e-01 72.1% 81.4%
3g7kB02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.50 34.0 2.52e-01 70.5% 92.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1152880 53.1.1.2 ↗ beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › Reo_sigma1 0.64 48.0 4.69e-01 100.0% 75.4%
4937562 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.61 36.0 3.46e-01 72.1% 51.4%
3585488 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 35.0 2.71e-01 70.5% 57.0%
3518601 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.51 43.0 3.11e-01 100.0% 35.9%
2322997 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 39.0 3.25e-01 93.4% 69.2%