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fiber-1
Euk-VirSimian_adenovirus_19
fiber-1__YP_009174210__Simian_adenovirus_19__38416
Identity
- Accession:
- YP_009174210 ↗
- Protein ID:
- fiber-1
- Kingdom:
- euk
Quality
84.4
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Mastadenovirus›
Simian_adenovirus_19
TaxID: 38416
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 114-283
Domain cluster:
rep: fiber__YP_009328924__Simian_mastadenovirus_WIV19__1923976__D315-484
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00541.25 best | Adeno_knob | 173.7 | 4.50e-51 | 100.0% | 93.0% |
D2
medium
residues 37-110
Domain cluster:
rep: fiber-2__YP_008719868__Turkey_aviadenovirus_5__1408258__D78-157
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1v1hB00 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.85 | 69.0 | 6.13e-01 | 86.5% | 72.3% |
| 3s6xA01 | 6.20.10.20 | Special › Other non-globular › Laminin › | 0.68 | 56.0 | 5.74e-01 | 98.6% | 98.6% |
| 4gu4A01 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.63 | 37.0 | 4.47e-01 | 83.8% | 100.0% |
| 1z1yA01 | 2.90.20.10 | Mainly Beta › Orthogonal Prism › Plasmodium vivax P25 fold › Plasmodium vivax P25 domain | 0.54 | 40.0 | 3.19e-01 | 83.8% | 55.3% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1663272 | 53.1.1.1 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › Adeno_shaft | 0.85 | 69.0 | 6.90e-01 | 86.5% | 97.3% |
| 2327461 | 53.1.1.0 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral | 0.80 | 69.0 | 6.99e-01 | 100.0% | 95.8% |
| 2321116 | 53.1.1.0 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral | 0.71 | 57.0 | 5.71e-01 | 100.0% | 85.7% |
| 3567480 | 389.6.1.4 ↗ | few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › GF_recep_IV | 0.53 | 44.0 | 2.54e-01 | 98.6% | 11.9% |
| 4659288 | 389.6.1.5 ↗ | few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › Furin-like_2 | 0.51 | 39.0 | 2.25e-01 | 87.8% | 12.0% |
| 3546394 | 389.1.1.98 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA, cEGF | 0.51 | 38.0 | 3.69e-01 | 82.4% | 80.0% |