←Back to structures
fiber-2
Euk-VirTurkey_aviadenovirus_5
fiber-2__YP_008719868__Turkey_aviadenovirus_5__1408258
Identity
- Accession:
- YP_008719868 ↗
- Protein ID:
- fiber-2
- Kingdom:
- euk
Quality
73.2
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Aviadenovirus›
turkey_adenovirus_5
TaxID: 1408258
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 166-358
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16812.11 best | AdHead_fibreRBD | 137.8 | 6.10e-40 | 97.4% | 99.0% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vtwA00 | 2.60.90.30 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain | 0.81 | 79.0 | 7.77e-01 | 100.0% | 94.1% |
| 2iumA00 | 2.60.90.30 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain | 0.74 | 70.0 | 6.80e-01 | 100.0% | 96.7% |
| 2vrsA03 | 2.60.90.40 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.67 | 45.0 | 5.28e-01 | 100.0% | 98.5% |
| 2wstA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.65 | 55.0 | 5.81e-01 | 100.0% | 96.6% |
| 2bzvA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.64 | 46.0 | 5.32e-01 | 100.0% | 97.3% |
| 1h7zA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.63 | 57.0 | 5.78e-01 | 100.0% | 96.9% |
| 4nehA04 | 2.60.40.1510 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 | 0.63 | 36.0 | 4.02e-01 | 88.6% | 70.1% |
| 1kacA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.63 | 55.0 | 5.64e-01 | 100.0% | 95.7% |
| 6g47A00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.63 | 52.0 | 5.52e-01 | 100.0% | 97.1% |
| 1pzsA00 | 2.60.40.200 | Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain | 0.56 | 33.0 | 3.49e-01 | 100.0% | 63.2% |
| 3lydA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.54 | 33.0 | 3.73e-01 | 96.9% | 79.6% |
| 3zghA00 | 2.60.40.3400 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 38.0 | 3.93e-01 | 96.9% | 77.4% |
| 4bfiB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 22.0 | 3.12e-01 | 85.0% | 83.3% |
| 2egjA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 24.0 | 2.92e-01 | 77.7% | 65.9% |
| 4ggtB00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.50 | 25.0 | 3.24e-01 | 89.1% | 83.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 199058 | 5092.1.1.5 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › AdHead_fibreRBD | 0.81 | 79.0 | 7.77e-01 | 100.0% | 94.1% |
| 2834097 | 5092.1.1.5 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › AdHead_fibreRBD | 0.75 | 72.0 | 6.88e-01 | 100.0% | 95.4% |
| 2542700 | 5092.1.1.5 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › AdHead_fibreRBD | 0.74 | 71.0 | 6.73e-01 | 100.0% | 92.8% |
| 185806 | 5092.1.1.5 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › AdHead_fibreRBD | 0.74 | 70.0 | 6.80e-01 | 100.0% | 96.7% |
| 3290942 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.73 | 32.0 | 4.33e-01 | 100.0% | 76.2% |
| 140191 | 5092.1.1.1 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Adeno_knob | 0.65 | 55.0 | 5.81e-01 | 100.0% | 96.6% |
| 4944856 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.62 | 38.0 | 4.63e-01 | 100.0% | 95.0% |
| 3989856 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.62 | 38.0 | 4.40e-01 | 100.0% | 83.6% |
| 3213551 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.57 | 37.0 | 4.43e-01 | 96.4% | 100.0% |
| 3213538 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.56 | 36.0 | 4.26e-01 | 96.4% | 95.4% |
| 4481035 | 223.1.1.43 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CusS | 0.53 | 28.0 | 3.06e-01 | 79.8% | 60.0% |
| 3964096 | 5084.1.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity | 0.51 | 36.0 | 3.76e-01 | 89.6% | 77.7% |
D2
medium
residues 78-157
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06536.17 best | Av_adeno_fibre | 28.1 | 2.00e-06 | 42.5% | 55.4% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1v1hB00 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.75 | 58.0 | 5.33e-01 | 82.5% | 72.3% |
| 3s6xA01 | 6.20.10.20 | Special › Other non-globular › Laminin › | 0.74 | 58.0 | 6.22e-01 | 100.0% | 100.0% |
| 3h5xA04 | 1.20.960.20 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › | 0.51 | 26.0 | 2.53e-01 | 76.2% | 38.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2321116 | 53.1.1.0 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral | 0.76 | 59.0 | 6.05e-01 | 98.8% | 87.0% |
| 1080995 | 53.1.1.3 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › Reo_sigmaC_M | 0.74 | 38.0 | 4.89e-01 | 77.5% | 88.9% |
| 4857570 | 4011.1.1.0 ↗ | beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins | 0.52 | 25.0 | 2.63e-01 | 81.2% | 44.2% |
| 3390829 | 389.1.1.97 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › cEGF, FXa_inhibition | 0.51 | 34.0 | 3.49e-01 | 70.0% | 87.5% |
| 3397118 | 389.1.1.104 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_PEAR1L, PF26673 | 0.50 | 40.0 | 2.75e-01 | 87.5% | 31.3% |