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fiber-2
Euk-VirSimian_adenovirus_16
fiber-2__YP_009174169__Simian_adenovirus_16__1715778
Identity
- Accession:
- YP_009174169 ↗
- Protein ID:
- fiber-2
- Kingdom:
- euk
Quality
84.1
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Mastadenovirus›
Simian_adenovirus_16
TaxID: 1715778
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 191-365
Domain cluster:
rep: fiber__YP_009328924__Simian_mastadenovirus_WIV19__1923976__D315-484
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00541.25 best | Adeno_knob | 193.4 | 4.30e-57 | 100.0% | 93.0% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kacA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.97 | 96.0 | 9.35e-01 | 100.0% | 95.1% |
| 2bzvA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.95 | 75.0 | 8.26e-01 | 100.0% | 96.6% |
| 1uxbA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.93 | 90.0 | 8.89e-01 | 100.0% | 96.7% |
| 6g47A00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.91 | 84.0 | 8.52e-01 | 100.0% | 96.5% |
| 2wstA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.89 | 83.0 | 8.37e-01 | 100.0% | 96.0% |
| 1h7zA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.87 | 84.0 | 8.10e-01 | 100.0% | 96.3% |
| 2j2jA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.86 | 83.0 | 8.24e-01 | 100.0% | 96.2% |
| 8owfA01 | 2.60.40.290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.71 | 39.0 | 4.83e-01 | 93.7% | 84.7% |
| 2gr7A00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.65 | 23.0 | 2.96e-01 | 100.0% | 52.5% |
| 3mi6B03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.64 | 38.0 | 4.80e-01 | 100.0% | 98.1% |
| 4lb8A02 | 2.60.40.3900 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 32.0 | 3.63e-01 | 100.0% | 67.2% |
| 3hlzB01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.57 | 33.0 | 3.65e-01 | 83.4% | 69.3% |
| 3zpeA00 | 2.60.90.50 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.56 | 42.0 | 4.62e-01 | 100.0% | 97.1% |
| 1qhdA01 | 2.60.120.170 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 41.0 | 4.19e-01 | 98.9% | 78.8% |
| 6a2bA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 28.0 | 3.64e-01 | 98.9% | 92.1% |
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 30.0 | 3.44e-01 | 84.0% | 72.6% |
| 4i0wD02 | 2.60.120.1290 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 34.0 | 3.87e-01 | 95.4% | 84.6% |
| 4jgpA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 28.0 | 3.64e-01 | 81.1% | 88.9% |
| 1kyfA01 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.54 | 34.0 | 3.79e-01 | 98.3% | 81.3% |
| 4tkoB01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.53 | 30.0 | 3.79e-01 | 84.6% | 98.9% |
| 6pxyA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 28.0 | 3.41e-01 | 90.9% | 76.1% |
| 6iouA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 28.0 | 3.44e-01 | 89.1% | 80.4% |
| 3c8cB02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 28.0 | 3.36e-01 | 80.6% | 79.6% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2670467 | 5092.1.1.1 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Adeno_knob | 0.92 | 90.0 | 8.39e-01 | 100.0% | 92.2% |
| 140191 | 5092.1.1.1 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Adeno_knob | 0.89 | 83.0 | 8.37e-01 | 100.0% | 96.0% |
| 352878 | 5092.1.1.1 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Adeno_knob | 0.89 | 86.0 | 8.14e-01 | 100.0% | 95.0% |
| 359427 | 5092.1.1.1 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Adeno_knob | 0.86 | 83.0 | 8.15e-01 | 100.0% | 94.1% |
| 3980078 | 274.1.1.24 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSppdC | 0.75 | 20.0 | 3.19e-01 | 94.3% | 57.1% |
| 3929117 | 11.1.5.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub | 0.74 | 38.0 | 4.77e-01 | 95.4% | 80.0% |
| 3290942 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.71 | 34.0 | 4.28e-01 | 100.0% | 74.3% |
| 4082072 | 12.1.1.22 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GH97_C | 0.70 | 37.0 | 4.93e-01 | 100.0% | 94.7% |
| 3962692 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.69 | 33.0 | 4.18e-01 | 98.9% | 76.0% |
| 3232198 | 11.1.5.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › muHD | 0.68 | 35.0 | 4.27e-01 | 94.9% | 75.7% |
| 4027766 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.67 | 35.0 | 4.43e-01 | 90.3% | 85.0% |
| 3592495 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.66 | 33.0 | 3.98e-01 | 94.9% | 71.3% |
| 3589291 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.66 | 39.0 | 4.92e-01 | 100.0% | 98.1% |
| 3714801 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 34.0 | 4.02e-01 | 97.7% | 70.8% |
| 3740389 | 11.1.5.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › muHD | 0.65 | 36.0 | 4.34e-01 | 94.9% | 80.9% |
| 3512269 | 79.1.1.16 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › DUF1983 | 0.64 | 24.0 | 3.28e-01 | 98.3% | 64.4% |
| 3609473 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.64 | 36.0 | 3.79e-01 | 100.0% | 60.0% |
| 5047927 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 30.0 | 3.61e-01 | 94.3% | 67.3% |
| 3571153 | 11.1.5.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub | 0.60 | 36.0 | 4.18e-01 | 90.3% | 81.6% |
| 3795920 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.60 | 32.0 | 4.04e-01 | 91.4% | 87.0% |
| 3639547 | 11.1.5.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › muHD | 0.59 | 38.0 | 4.28e-01 | 91.4% | 85.4% |
| 5065716 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 32.0 | 3.83e-01 | 100.0% | 78.3% |
| 3598070 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 33.0 | 3.84e-01 | 94.3% | 78.3% |
| 5040389 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 36.0 | 4.02e-01 | 100.0% | 83.8% |
| 4988781 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 34.0 | 3.66e-01 | 93.1% | 68.4% |
| 3213707 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 35.0 | 4.14e-01 | 100.0% | 95.5% |
| 3215260 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.55 | 38.0 | 4.19e-01 | 97.1% | 87.9% |
| 3541359 | 11.1.1.538 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CHRD | 0.55 | 35.0 | 4.01e-01 | 92.0% | 90.0% |
| 3784793 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 36.0 | 3.98e-01 | 98.9% | 82.9% |
| 4212620 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.54 | 34.0 | 3.96e-01 | 85.1% | 90.8% |
| 4975180 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 40.0 | 3.74e-01 | 100.0% | 62.4% |
| 1108141 | 881.1.1.12 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Tsi3 | 0.54 | 29.0 | 3.39e-01 | 84.0% | 71.4% |
| 3240153 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.54 | 36.0 | 4.13e-01 | 97.1% | 95.2% |
| 4489485 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.53 | 31.0 | 3.06e-01 | 84.0% | 48.7% |
| 4027512 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 32.0 | 3.72e-01 | 95.4% | 85.8% |
| 3489568 | 11.1.1.44 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 | 0.52 | 34.0 | 3.78e-01 | 98.3% | 83.0% |
| 3893654 | 1.1.7.69 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel | 0.52 | 30.0 | 3.51e-01 | 84.0% | 81.7% |
| 3201051 | 11.1.1.44 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 | 0.52 | 33.0 | 3.63e-01 | 99.4% | 77.1% |
| 2387830 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 32.0 | 3.49e-01 | 89.1% | 70.9% |
| 3814053 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.52 | 37.0 | 4.12e-01 | 97.1% | 94.8% |
| 3638672 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.51 | 36.0 | 3.81e-01 | 97.7% | 83.9% |
| 3716614 | 11.1.1.67 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF525 | 0.50 | 33.0 | 3.78e-01 | 88.6% | 91.2% |
| 3941056 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 30.0 | 3.35e-01 | 100.0% | 75.4% |
| 4953273 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.50 | 30.0 | 3.37e-01 | 83.4% | 74.3% |
D2
medium
residues 66-185
Domain cluster:
representative
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00608.23 best | Adeno_shaft | 14.0 | 4.50e-02 | 35.0% | 90.9% |
| PF00608.23 | Adeno_shaft | 13.8 | 5.40e-02 | 35.0% | 84.1% |
| PF00608.23 | Adeno_shaft | 17.9 | 2.70e-03 | 32.5% | 65.9% |
| PF00608.23 | Adeno_shaft | 10.9 | 4.30e-01 | 22.5% | 54.5% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1v1hB00 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.63 | 49.0 | 5.31e-01 | 82.5% | 100.0% |