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fiber
Euk-VirHuman_mastadenovirus_C
fiber__NP_040533__Human_mastadenovirus_C__129951
Identity
- Accession:
- NP_040533 ↗
- Protein ID:
- fiber
- Kingdom:
- euk
Quality
81.1
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Mastadenovirus›
Human_mastadenovirus_C
TaxID: 129951
Cluster
View cluster (14 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 400-579
Domain cluster:
rep: fiber__YP_009328924__Simian_mastadenovirus_WIV19__1923976__D315-484
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00541.25 best | Adeno_knob | 223.5 | 2.50e-66 | 100.0% | 93.0% |
D2
medium
residues 334-391
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00608.23 best | Adeno_shaft | 62.2 | 3.80e-17 | 77.6% | 100.0% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1v1hB00 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.85 | 76.0 | 6.27e-01 | 100.0% | 57.4% |
| 3s6xA01 | 6.20.10.20 | Special › Other non-globular › Laminin › | 0.70 | 55.0 | 5.25e-01 | 100.0% | 73.9% |
| 3s6xC03 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.64 | 41.0 | 4.64e-01 | 74.1% | 95.0% |
| 4gu4A01 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.64 | 45.0 | 4.97e-01 | 100.0% | 100.0% |
| 1vkdA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 42.0 | 2.79e-01 | 100.0% | 50.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1663272 | 53.1.1.1 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › Adeno_shaft | 0.84 | 76.0 | 6.94e-01 | 100.0% | 77.3% |
| 2327461 | 53.1.1.0 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral | 0.77 | 64.0 | 5.99e-01 | 100.0% | 75.0% |
| 3790147 | 389.1.1.11 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Tme5_EGF_like | 0.56 | 40.0 | 4.32e-01 | 77.6% | 97.8% |
| 3624949 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.53 | 36.0 | 3.71e-01 | 72.4% | 100.0% |
| 3583822 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.51 | 36.0 | 3.60e-01 | 77.6% | 80.0% |