←Back to structures

fiber

Euk-Vir

Human_mastadenovirus_D

fiber__YP_001974434__Human_mastadenovirus_D__130310

Identity

Accession:
YP_001974434 ↗
Protein ID:
fiber
Kingdom:
euk

Quality

82.6 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› Human_mastadenovirus_D

TaxID: 130310

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 181-359
PDB
Domain cluster: rep: fiber__YP_009328924__Simian_mastadenovirus_WIV19__1923976__D315-484
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00541.25 best Adeno_knob 204.8 1.30e-60 100.0% 93.0%
D2 medium residues 45-94
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v1hB00 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.74 63.0 5.13e-01 100.0% 60.4%
3s6xA01 6.20.10.20 Special › Other non-globular › Laminin › 0.62 53.0 4.82e-01 100.0% 75.4%
3s6xC03 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.56 39.0 4.14e-01 94.0% 95.0%
3ntnB01 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.55 43.0 3.13e-01 94.0% 85.5%
4rsuE01 2.10.50.10 Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 0.54 37.0 3.62e-01 76.0% 72.9%
3k9xC02 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.53 35.0 3.66e-01 70.0% 93.2%
1z1yA01 2.90.20.10 Mainly Beta › Orthogonal Prism › Plasmodium vivax P25 fold › Plasmodium vivax P25 domain 0.53 41.0 2.93e-01 92.0% 41.2%
3sobB02 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.52 37.0 3.78e-01 80.0% 97.8%
3abgB01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.51 41.0 3.02e-01 96.0% 71.6%
1kxgA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 34.0 2.52e-01 70.0% 72.2%
2ostD00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.50 37.0 2.95e-01 90.0% 65.4%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3763245 389.1.3.0 ↗ few secondary structure elements › EGF-like › EGF-related › TNF receptor-like 0.67 47.0 4.94e-01 76.0% 100.0%
3883215 389.6.1.4 ↗ few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › GF_recep_IV 0.65 46.0 2.73e-01 80.0% 13.3%
2321116 53.1.1.0 ↗ beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral 0.63 54.0 4.72e-01 100.0% 68.8%
3866159 389.1.1.28 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › cEGF 0.59 39.0 4.13e-01 70.0% 100.0%
4659288 389.6.1.5 ↗ few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › Furin-like_2 0.58 47.0 2.59e-01 96.0% 8.5%
3779350 389.1.1.98 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA, cEGF 0.58 41.0 3.26e-01 78.0% 50.4%
4473013 389.1.1.28 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › cEGF 0.57 39.0 4.04e-01 74.0% 97.8%
3875314 389.1.1.17 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › FXa_inhibition 0.57 39.0 3.88e-01 76.0% 83.6%
3797494 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.55 38.0 3.92e-01 72.0% 91.1%
3397117 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.55 40.0 3.82e-01 84.0% 69.2%
3592923 389.1.3.0 ↗ few secondary structure elements › EGF-like › EGF-related › TNF receptor-like 0.55 43.0 3.59e-01 96.0% 96.2%
3515560 389.1.1.7 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA 0.54 39.0 3.60e-01 78.0% 91.2%
3747882 389.1.1.28 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › cEGF 0.54 37.0 3.80e-01 72.0% 100.0%
4475279 389.1.1.17 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › FXa_inhibition 0.53 35.0 3.65e-01 70.0% 97.7%
3748090 389.1.1.17 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › FXa_inhibition 0.53 36.0 3.71e-01 72.0% 95.6%
3559277 389.1.1.97 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › cEGF, FXa_inhibition 0.52 37.0 3.78e-01 78.0% 97.8%
3930573 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.52 38.0 3.58e-01 82.0% 83.1%
3853560 389.1.1.7 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA 0.52 35.0 3.44e-01 74.0% 81.7%
3546394 389.1.1.98 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA, cEGF 0.52 42.0 3.70e-01 100.0% 88.2%
3454464 60.1.2.2 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C 0.52 36.0 2.23e-01 72.0% 55.4%
3539552 389.6.1.5 ↗ few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › Furin-like_2 0.52 40.0 2.74e-01 88.0% 24.2%
3761004 389.1.1.98 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA, cEGF 0.51 34.0 3.65e-01 70.0% 100.0%
3866801 389.1.1.1 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.51 36.0 3.85e-01 90.0% 100.0%