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fiber

Euk-Vir

Murine_adenovirus_2

fiber__YP_004123756__Murine_adenovirus_2__931972

Identity

Accession:
YP_004123756 ↗
Protein ID:
fiber
Kingdom:
euk

Quality

62.6 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› Murine_adenovirus_2

TaxID: 931972

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 312-363
PDB
Domain cluster: rep: fiber_2__YP_004300224__Simian_adenovirus_49__995022__D67-118
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v1hB00 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.69 52.0 4.38e-01 88.5% 54.5%
3s6xA01 6.20.10.20 Special › Other non-globular › Laminin › 0.58 44.0 4.10e-01 84.6% 66.7%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2327461 53.1.1.0 ↗ beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral 0.63 48.0 4.38e-01 84.6% 66.7%
2321116 53.1.1.0 ↗ beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral 0.60 45.0 4.07e-01 84.6% 59.7%
3680667 389.7.1.0 ↗ few secondary structure elements › EGF-like › EGF-like domain in S-receptor kinase SRK9 › EGF-like domain in S-receptor kinase SRK9 0.53 31.0 3.38e-01 86.5% 67.5%
3232853 389.1.1.29 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EB 0.50 35.0 3.42e-01 76.9% 93.3%
D2 medium residues 426-488
PDB
Domain cluster: rep: fiber-2__YP_008719868__Turkey_aviadenovirus_5__1408258__D78-157
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v1hB00 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.68 56.0 4.83e-01 92.1% 64.4%
3s6xA01 6.20.10.20 Special › Other non-globular › Laminin › 0.64 51.0 5.05e-01 93.7% 87.0%
4gu4A01 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.60 39.0 4.45e-01 82.5% 100.0%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 37.0 2.50e-01 87.3% 54.9%
2m74A01 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.50 35.0 3.50e-01 84.1% 69.6%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2327461 53.1.1.0 ↗ beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral 0.66 56.0 5.41e-01 98.4% 90.3%
2321116 53.1.1.0 ↗ beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral 0.65 53.0 5.02e-01 93.7% 77.9%
1152880 53.1.1.2 ↗ beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › Reo_sigma1 0.56 44.0 4.40e-01 92.1% 83.1%
3390829 389.1.1.97 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › cEGF, FXa_inhibition 0.52 36.0 3.45e-01 76.2% 73.8%
4659288 389.6.1.5 ↗ few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › Furin-like_2 0.52 39.0 2.20e-01 84.1% 6.0%
3749249 389.6.1.15 ↗ few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › GF_recep_IV, Furin-like_2 0.51 40.0 2.40e-01 93.7% 19.4%
3567480 389.6.1.4 ↗ few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › GF_recep_IV 0.51 42.0 2.40e-01 100.0% 9.5%
D3 medium residues 615-638_654-747
PDB