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fiber
Euk-VirFowl_aviadenovirus_5
fiber__YP_007985662__Fowl_aviadenovirus_5__172861
Identity
- Accession:
- YP_007985662 ↗
- Protein ID:
- fiber
- Kingdom:
- euk
Quality
70.8
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Aviadenovirus›
Fowl_aviadenovirus_5
TaxID: 172861
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 200-263
Domain cluster:
rep: fiber-2__YP_008719868__Turkey_aviadenovirus_5__1408258__D78-157
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06536.17 best | Av_adeno_fibre | 32.8 | 7.10e-08 | 78.1% | 78.6% |
| PF06536.17 | Av_adeno_fibre | 24.7 | 2.50e-05 | 40.6% | 44.6% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3s6xA01 | 6.20.10.20 | Special › Other non-globular › Laminin › | 0.67 | 41.0 | 4.09e-01 | 90.6% | 58.0% |
| 1v1hB00 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.56 | 47.0 | 4.17e-01 | 98.4% | 63.4% |
| 4gu4A01 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.54 | 33.0 | 3.92e-01 | 79.7% | 93.0% |
| 4xcmA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.54 | 38.0 | 3.13e-01 | 75.0% | 93.5% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3489111 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.58 | 39.0 | 2.70e-01 | 70.3% | 37.6% |
| 3933019 | 394.1.1.0 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins | 0.57 | 33.0 | 3.41e-01 | 76.6% | 59.3% |
| 1663272 | 53.1.1.1 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › Adeno_shaft | 0.57 | 48.0 | 4.58e-01 | 98.4% | 84.0% |
| 3929452 | 394.1.1.0 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins | 0.54 | 33.0 | 3.33e-01 | 79.7% | 60.0% |
| 2321116 | 53.1.1.0 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral | 0.54 | 44.0 | 4.18e-01 | 98.4% | 76.6% |
| None | — | 0.53 | 38.0 | 2.63e-01 | 79.7% | 46.4% | |
| 4288795 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.53 | 42.0 | 2.77e-01 | 98.4% | 52.1% |
| 4034031 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.51 | 35.0 | 3.57e-01 | 73.4% | 78.5% |
| 4028231 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 40.0 | 2.52e-01 | 89.1% | 33.9% |
| 3594123 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 38.0 | 2.55e-01 | 85.9% | 56.1% |
| 4314610 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.50 | 34.0 | 2.50e-01 | 70.3% | 35.9% |
D2
medium
residues 296-351
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06536.17 best | Av_adeno_fibre | 25.1 | 1.80e-05 | 64.3% | 57.1% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1v1hB00 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.68 | 54.0 | 4.51e-01 | 89.3% | 56.4% |
| 3s6xA01 | 6.20.10.20 | Special › Other non-globular › Laminin › | 0.67 | 50.0 | 4.72e-01 | 83.9% | 68.1% |
| 4gu4A01 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.63 | 44.0 | 4.76e-01 | 89.3% | 95.3% |
| 4q0mA01 | 3.40.50.1170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › L-asparaginase, N-terminal domain | 0.57 | 48.0 | 3.38e-01 | 100.0% | 83.4% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1080995 | 53.1.1.3 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › Reo_sigmaC_M | 0.71 | 44.0 | 4.75e-01 | 87.5% | 77.8% |
| 2321116 | 53.1.1.0 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral | 0.69 | 53.0 | 4.90e-01 | 89.3% | 67.5% |
| 1152880 | 53.1.1.2 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › Reo_sigma1 | 0.62 | 43.0 | 4.12e-01 | 87.5% | 63.1% |
| 3510969 | 387.1.1.57 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › Galaxin_repeat | 0.52 | 37.0 | 3.27e-01 | 78.6% | 75.6% |
D3
medium
residues 352-407_531-554
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vtwA00 | 2.60.90.30 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain | 0.90 | 85.0 | 6.10e-01 | 100.0% | 96.6% |
| 2iumA00 | 2.60.90.30 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain | 0.87 | 80.0 | 5.73e-01 | 98.8% | 98.6% |
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.84 | 56.0 | 6.47e-01 | 95.0% | 93.2% |
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.84 | 52.0 | 5.99e-01 | 96.2% | 85.0% |
| 1h7zA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.69 | 63.0 | 4.68e-01 | 100.0% | 99.0% |
| 2zf3C00 | 2.50.20.30 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.66 | 51.0 | 3.92e-01 | 96.2% | 36.3% |
| 4ggtB00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.65 | 44.0 | 4.02e-01 | 96.2% | 52.8% |
| 2wstA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.65 | 58.0 | 4.46e-01 | 98.8% | 98.3% |
| 6g47A00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.63 | 58.0 | 4.46e-01 | 100.0% | 98.8% |
| 2ciuA00 | 3.10.450.320 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 | 0.62 | 40.0 | 3.50e-01 | 86.3% | 42.3% |
| 1n9eA01 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.61 | 55.0 | 3.32e-01 | 97.5% | 59.0% |
| 5w8mA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.60 | 53.0 | 3.97e-01 | 97.5% | 98.0% |
| 3pgbA01 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.60 | 54.0 | 3.26e-01 | 97.5% | 58.3% |
| 1pu4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.60 | 54.0 | 3.36e-01 | 97.5% | 73.2% |
| 1bt9A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.59 | 51.0 | 3.42e-01 | 100.0% | 24.1% |
| 3k8aB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 36.0 | 3.35e-01 | 75.0% | 49.5% |
| 1o20A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.56 | 40.0 | 2.85e-01 | 76.2% | 93.6% |
| 3zghA00 | 2.60.40.3400 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 49.0 | 3.74e-01 | 100.0% | 79.1% |
| 3en2A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 34.0 | 3.28e-01 | 72.5% | 56.0% |
| 3e99A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 45.0 | 3.73e-01 | 96.2% | 80.4% |
| 3fhwA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 34.0 | 3.19e-01 | 72.5% | 53.5% |
| 4o3vA00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.52 | 45.0 | 3.84e-01 | 100.0% | 79.0% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 34.0 | 3.15e-01 | 77.5% | 50.9% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 199058 | 5092.1.1.5 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › AdHead_fibreRBD | 0.90 | 85.0 | 6.10e-01 | 100.0% | 96.6% |
| 2542700 | 5092.1.1.5 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › AdHead_fibreRBD | 0.88 | 79.0 | 5.58e-01 | 96.2% | 93.7% |
| 185806 | 5092.1.1.5 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › AdHead_fibreRBD | 0.87 | 80.0 | 5.73e-01 | 98.8% | 98.6% |
| 2834097 | 5092.1.1.5 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › AdHead_fibreRBD | 0.82 | 76.0 | 5.45e-01 | 100.0% | 97.7% |
| 5046132 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.75 | 57.0 | 3.92e-01 | 100.0% | 25.1% |
| 3875809 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.67 | 55.0 | 4.20e-01 | 97.5% | 41.8% |
| 2773699 | 243.1.1.12 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 | 0.65 | 42.0 | 3.59e-01 | 86.3% | 41.3% |
| 3512269 | 79.1.1.16 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › DUF1983 | 0.63 | 44.0 | 4.29e-01 | 90.0% | 65.6% |
| 3978947 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.61 | 53.0 | 3.47e-01 | 100.0% | 23.0% |
| 3484227 | 4051.1.1.0 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz | 0.61 | 47.0 | 3.63e-01 | 93.8% | 38.2% |
| 4522601 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.61 | 53.0 | 3.45e-01 | 96.2% | 26.7% |
| 2034 | 12.3.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid | 0.61 | 55.0 | 3.37e-01 | 97.5% | 64.6% |
| 3271615 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 43.0 | 2.70e-01 | 100.0% | 13.6% |
| 3717466 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.59 | 54.0 | 4.05e-01 | 100.0% | 50.5% |
| 4978680 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.58 | 43.0 | 3.13e-01 | 100.0% | 25.9% |
| 4880355 | 11.1.1.11 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Usher | 0.57 | 45.0 | 4.01e-01 | 98.8% | 60.4% |
| 4025179 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.57 | 51.0 | 3.78e-01 | 98.8% | 38.5% |
| 4014865 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.56 | 51.0 | 4.07e-01 | 100.0% | 68.4% |
| 4466226 | 5087.1.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell | 0.56 | 40.0 | 3.68e-01 | 96.2% | 57.1% |
| 3735123 | 331.3.1.30 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3074 | 0.56 | 49.0 | 3.39e-01 | 98.8% | 31.2% |
| 5053256 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.52 | 42.0 | 3.64e-01 | 87.5% | 67.2% |
| 3594207 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.52 | 44.0 | 3.71e-01 | 96.2% | 82.8% |
| 3339362 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.52 | 41.0 | 3.18e-01 | 85.0% | 73.1% |
| 2605257 | 3521.1.1.0 ↗ | a+b three layers › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain | 0.52 | 35.0 | 3.11e-01 | 93.8% | 49.1% |
D4
medium
residues 408-530