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fiber
Euk-VirSimian_adenovirus_13
fiber__YP_009174032__Simian_adenovirus_13__38432
Identity
- Accession:
- YP_009174032 ↗
- Protein ID:
- fiber
- Kingdom:
- euk
Quality
82.8
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Mastadenovirus›
Simian_adenovirus_13
TaxID: 38432
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 133-311
Domain cluster:
rep: fiber__YP_009328924__Simian_mastadenovirus_WIV19__1923976__D315-484
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00541.25 best | Adeno_knob | 148.8 | 2.00e-43 | 100.0% | 93.0% |
D2
medium
residues 39-123
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00608.23 best | Adeno_shaft | 34.1 | 2.40e-08 | 47.1% | 88.6% |
| PF00608.23 | Adeno_shaft | 39.3 | 5.80e-10 | 44.7% | 84.1% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1v1hB00 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.60 | 50.0 | 4.73e-01 | 90.6% | 77.2% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2327461 | 53.1.1.0 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral | 0.61 | 45.0 | 4.82e-01 | 77.6% | 95.8% |
| 1663272 | 53.1.1.1 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › Adeno_shaft | 0.61 | 45.0 | 4.81e-01 | 78.8% | 100.0% |
| 2321116 | 53.1.1.0 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral | 0.60 | 46.0 | 4.80e-01 | 81.2% | 93.5% |
| 3546394 | 389.1.1.98 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA, cEGF | 0.53 | 37.0 | 3.71e-01 | 72.9% | 84.7% |
| 3398685 | 389.6.1.4 ↗ | few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › GF_recep_IV | 0.52 | 45.0 | 2.86e-01 | 100.0% | 73.5% |
| 3493334 | 389.1.1.98 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA, cEGF | 0.51 | 35.0 | 3.52e-01 | 70.6% | 100.0% |
| 4659288 | 389.6.1.5 ↗ | few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › Furin-like_2 | 0.51 | 43.0 | 2.54e-01 | 100.0% | 16.8% |