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fiber

Euk-Vir

Bat_mastadenovirus_WIV9

fiber__YP_009246367__Bat_mastadenovirus_WIV9__1788436

Identity

Accession:
YP_009246367 ↗
Protein ID:
fiber
Kingdom:
euk

Quality

80.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 199-369
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00541.25 best Adeno_knob 133.4 1.00e-38 100.0% 93.5%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bzvA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.88 72.0 7.80e-01 100.0% 97.9%
2wstA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.87 84.0 8.35e-01 100.0% 97.2%
1kacA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.86 83.0 8.03e-01 100.0% 96.2%
1h7zA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.85 82.0 7.83e-01 100.0% 97.9%
1uxbA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.84 81.0 7.92e-01 100.0% 97.8%
6g47A00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.84 79.0 7.94e-01 100.0% 97.7%
2j2jA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.82 79.0 7.77e-01 100.0% 97.3%
2iumA00 2.60.90.30 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain 0.79 75.0 6.90e-01 100.0% 97.2%
2vrsA03 2.60.90.40 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.74 55.0 6.17e-01 100.0% 98.5%
3l81A02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.71 38.0 4.62e-01 87.7% 80.0%
3ndzE00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 36.0 4.49e-01 87.7% 80.4%
1wzlA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.69 35.0 4.84e-01 100.0% 100.0%
8owfA01 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 38.0 4.67e-01 92.4% 84.7%
2x41A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 30.0 3.61e-01 91.2% 61.3%
2g30A01 2.60.40.1150 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 33.0 3.94e-01 100.0% 71.8%
1b4tA00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.63 39.0 4.10e-01 100.0% 67.3%
6mw4A01 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.62 35.0 4.03e-01 96.5% 73.1%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.61 22.0 3.63e-01 99.4% 91.7%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.61 32.0 3.58e-01 99.4% 61.9%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 26.0 3.34e-01 93.6% 71.6%
2y7lA01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 39.0 4.00e-01 90.6% 72.0%
1pzsA00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.56 36.0 3.68e-01 100.0% 63.7%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 35.0 4.13e-01 100.0% 98.2%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 30.0 3.65e-01 79.5% 85.1%
6pxyA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 29.0 3.41e-01 90.6% 76.1%
4i0wD02 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.53 34.0 3.75e-01 97.7% 83.1%
4jgpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 29.0 3.61e-01 82.5% 89.9%
1jz7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 31.0 3.65e-01 98.8% 87.0%
3c8cB02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 29.0 3.43e-01 81.9% 80.5%
4xmqA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 29.0 3.28e-01 82.5% 72.2%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
140191 5092.1.1.1 beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Adeno_knob 0.87 84.0 8.35e-01 100.0% 97.2%
352878 5092.1.1.1 beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Adeno_knob 0.85 82.0 7.71e-01 100.0% 97.0%
2670467 5092.1.1.1 beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Adeno_knob 0.84 81.0 7.49e-01 100.0% 93.2%
3929117 11.1.5.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.72 39.0 4.72e-01 94.2% 80.0%
3290942 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 35.0 4.36e-01 100.0% 76.2%
3589291 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.69 43.0 5.27e-01 99.4% 99.0%
3335769 11.1.5.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.69 37.0 4.56e-01 94.2% 82.9%
4221191 11.1.5.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM_2 0.69 36.0 4.64e-01 93.6% 89.5%
3962692 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 33.0 4.15e-01 97.7% 76.0%
4941305 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 37.0 4.48e-01 93.6% 80.9%
3264296 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.68 33.0 3.60e-01 100.0% 54.3%
4024291 11.1.1.105 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Coatamer_beta_C 0.67 33.0 3.71e-01 98.8% 59.2%
4027766 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.66 35.0 4.39e-01 87.7% 85.0%
5051358 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 36.0 4.42e-01 87.7% 84.8%
4938174 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.65 35.0 4.03e-01 94.2% 71.7%
3250889 11.1.1.44 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 0.64 32.0 3.84e-01 97.7% 68.7%
3164980 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.64 47.0 5.30e-01 100.0% 99.2%
5000149 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 31.0 3.54e-01 90.6% 60.0%
3299765 11.1.5.37 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › muHD 0.64 34.0 4.13e-01 93.6% 80.0%
3291785 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.64 33.0 4.11e-01 93.6% 80.0%
5050655 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 34.0 4.18e-01 90.6% 82.9%
3795920 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.63 30.0 3.78e-01 100.0% 74.0%
3930755 11.1.1.647 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GAE_BBS1 0.63 31.0 3.53e-01 93.0% 60.0%
3252132 11.1.3.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like › Sod_Cu 0.61 39.0 3.83e-01 100.0% 57.8%
3454136 11.1.1.264 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_GlcNase 0.60 32.0 3.80e-01 90.6% 74.6%
4982173 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 31.0 3.73e-01 89.5% 73.0%
3472822 11.1.1.647 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GAE_BBS1 0.60 31.0 3.57e-01 93.6% 66.7%
3213707 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 29.0 3.51e-01 100.0% 68.2%
3701504 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 33.0 3.44e-01 94.2% 54.5%
4009835 11.1.1.93 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1425 0.60 31.0 3.96e-01 98.2% 87.4%
3926283 11.1.5.64 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PIG-X 0.59 37.0 3.63e-01 93.6% 57.8%
5061075 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 30.0 3.32e-01 90.6% 58.6%
3912555 11.1.5.64 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PIG-X 0.58 34.0 3.31e-01 93.6% 51.1%
5005735 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 28.0 3.66e-01 90.6% 83.3%
3247634 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.57 31.0 3.45e-01 100.0% 65.2%
5054941 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 30.0 3.53e-01 89.5% 73.3%
3716614 11.1.1.67 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF525 0.55 35.0 3.92e-01 86.5% 83.2%
3213551 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.55 38.0 4.28e-01 94.7% 95.2%
5047423 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 32.0 3.77e-01 94.7% 83.5%
3213538 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.54 38.0 4.19e-01 94.7% 92.3%
3308755 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 35.0 3.84e-01 91.8% 82.9%
4297645 5043.1.1.19 extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › CusS 0.52 28.0 2.85e-01 84.8% 48.6%
3221683 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.51 35.0 3.90e-01 94.7% 90.0%
3312366 11.1.1.635 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_N_CWD1 0.51 36.0 3.90e-01 98.2% 84.8%
3514060 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 37.0 3.60e-01 100.0% 66.0%
3599013 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 36.0 3.71e-01 94.2% 78.1%
3595065 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 34.0 3.67e-01 100.0% 82.1%
D2 medium residues 147-198
PDB
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v1hB00 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.73 62.0 5.09e-01 100.0% 58.4%
3s6xC03 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.66 44.0 4.79e-01 71.2% 97.5%
3s6xA01 6.20.10.20 Special › Other non-globular › Laminin › 0.65 52.0 4.92e-01 100.0% 73.9%
4gu4A01 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.61 45.0 4.80e-01 98.1% 100.0%
4q0mA01 3.40.50.1170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › L-asparaginase, N-terminal domain 0.52 38.0 2.69e-01 82.7% 89.9%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1663272 53.1.1.1 beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › Adeno_shaft 0.73 62.0 5.62e-01 100.0% 80.0%
2327461 53.1.1.0 beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral 0.71 60.0 5.51e-01 100.0% 73.6%
2321116 53.1.1.0 beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral 0.67 55.0 4.97e-01 100.0% 66.2%
1152880 53.1.1.2 beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › Reo_sigma1 0.60 45.0 4.26e-01 100.0% 67.7%
3840758 389.1.1.17 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › FXa_inhibition 0.51 34.0 3.58e-01 71.2% 97.8%
3914399 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.51 38.0 2.59e-01 88.5% 57.5%