←Back to structures
fiber
Euk-VirBat_mastadenovirus_WIV18
fiber__YP_009388329__Bat_mastadenovirus_WIV18__1986506
Identity
- Accession:
- YP_009388329 ↗
- Protein ID:
- fiber
- Kingdom:
- euk
Quality
81.1
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Mastadenovirus›
Bat_mastadenovirus_WIV18
TaxID: 1986506
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 438-570
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00541.25 best | Adeno_knob | 110.3 | 1.30e-31 | 100.0% | 67.2% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wstA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.87 | 80.0 | 7.10e-01 | 100.0% | 71.6% |
| 1kacA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.86 | 80.0 | 6.98e-01 | 100.0% | 69.7% |
| 6g47A00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.85 | 73.0 | 6.60e-01 | 100.0% | 69.6% |
| 1uxbA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.84 | 80.0 | 7.02e-01 | 100.0% | 71.2% |
| 1h7zA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.82 | 78.0 | 6.77e-01 | 100.0% | 70.2% |
| 3zpeA00 | 2.60.90.50 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.60 | 37.0 | 3.73e-01 | 100.0% | 59.4% |
| 1pn2B01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 32.0 | 3.10e-01 | 95.5% | 52.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 140191 | 5092.1.1.1 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Adeno_knob | 0.87 | 80.0 | 7.10e-01 | 100.0% | 71.6% |
| 352878 | 5092.1.1.1 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Adeno_knob | 0.84 | 80.0 | 6.86e-01 | 100.0% | 69.3% |
| 1146571 | 5092.1.1.8 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › TAdV_Fibre-like_head | 0.60 | 37.0 | 3.73e-01 | 100.0% | 59.4% |
| 3990561 | 11.1.1.955 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_4th | 0.58 | 37.0 | 4.10e-01 | 97.7% | 80.0% |
| 3221889 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 33.0 | 3.64e-01 | 98.5% | 76.0% |
| 3480347 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 34.0 | 3.65e-01 | 99.2% | 76.4% |
| 4400928 | 1.1.7.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase | 0.51 | 34.0 | 3.55e-01 | 98.5% | 72.0% |
| 3268156 | 223.2.1.4 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN | 0.50 | 41.0 | 3.68e-01 | 86.5% | 62.7% |
D2
medium
residues 226-377
Domain cluster:
rep: fiber-2__YP_009174169__Simian_adenovirus_16__1715778__D66-185
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00608.23 best | Adeno_shaft | 15.3 | 1.80e-02 | 23.0% | 70.5% |
| PF00608.23 | Adeno_shaft | 10.8 | 4.50e-01 | 21.7% | 40.9% |
| PF00608.23 | Adeno_shaft | 10.2 | 7.10e-01 | 21.1% | 52.3% |
| PF00608.23 | Adeno_shaft | 12.4 | 1.50e-01 | 20.4% | 56.8% |