←Back to structures

fiber

Euk-Vir

red_squirrel_adenovirus_1

fiber__YP_009389507__red_squirrel_adenovirus_1__2773314

Identity

Accession:: YP_009389507 ↗
Protein ID:: fiber
Kingdom:: euk

Quality

80.0 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› red_squirrel_adenovirus_1

TaxID: 2773314

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 470-634

PDB

Domain cluster: rep: fiber__YP_009328924__Simian_mastadenovirus_WIV19__1923976__D315-484

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00541.25 best	Adeno_knob	120.5	9.70e-35	100.0%	92.5%

D2 medium residues 132-194

PDB

Domain cluster: rep: fiber_2__YP_004300224__Simian_adenovirus_49__995022__D67-118

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1v1hB00	2.10.25.20	Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1	0.73	63.0	5.43e-01	98.4%	68.3%
3s6xA01	6.20.10.20	Special › Other non-globular › Laminin ›	0.65	53.0	5.21e-01	100.0%	84.1%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1663272	53.1.1.1 ↗	beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › Adeno_shaft	0.73	64.0	6.06e-01	98.4%	92.0%
3243108	389.3.1.0 ↗	few secondary structure elements › EGF-like › LDL receptor-like module › LDL receptor-like module	0.54	37.0	3.98e-01	85.7%	83.6%
None	—		0.53	38.0	3.76e-01	77.8%	87.1%
3922237	5.1.3.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed	0.52	38.0	2.65e-01	84.1%	53.7%
3790147	389.1.1.11 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Tme5_EGF_like	0.50	34.0	3.76e-01	79.4%	100.0%

D3 medium residues 255-313

PDB

Domain cluster: rep: fiber__YP_002213796__Human_mastadenovirus_B__108098__D74-130

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00608.23 best	Adeno_shaft	16.8	5.90e-03	57.6%	56.8%
PF00608.23	Adeno_shaft	15.4	1.70e-02	45.8%	54.5%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1v1hB00	2.10.25.20	Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1	0.80	70.0	5.89e-01	100.0%	64.4%
3s6xA01	6.20.10.20	Special › Other non-globular › Laminin ›	0.69	53.0	5.06e-01	88.1%	72.5%
3s6xC03	2.10.25.20	Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1	0.64	42.0	4.79e-01	83.1%	100.0%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1663272	53.1.1.1 ↗	beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › Adeno_shaft	0.80	70.0	6.53e-01	100.0%	86.7%
2327461	53.1.1.0 ↗	beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral	0.73	65.0	6.07e-01	100.0%	86.1%
2321116	53.1.1.0 ↗	beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral	0.64	54.0	5.08e-01	100.0%	79.2%
3790147	389.1.1.11 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Tme5_EGF_like	0.57	40.0	4.32e-01	74.6%	100.0%
3583822	389.1.1.0 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin	0.52	38.0	3.88e-01	84.7%	95.0%
3682980	4099.1.1.0 ↗	a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like	0.51	38.0	2.72e-01	84.7%	60.5%
4334661	389.1.1.1 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF	0.50	32.0	3.65e-01	76.3%	97.5%

D4 medium residues 314-372

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3s6xA01	6.20.10.20	Special › Other non-globular › Laminin ›	0.67	50.0	4.74e-01	100.0%	68.1%
4gu4A01	2.10.25.20	Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1	0.62	40.0	4.44e-01	94.9%	90.7%
1v1hB00	2.10.25.20	Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1	0.56	50.0	4.18e-01	100.0%	66.3%
1emoA00	2.10.25.10	Mainly Beta › Ribbon › Laminin › Laminin	0.51	41.0	3.75e-01	93.2%	79.3%

ECOD (20)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1080995	53.1.1.3 ↗	beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › Reo_sigmaC_M	0.68	42.0	4.65e-01	100.0%	82.2%
1833577	53.1.1.3 ↗	beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › Reo_sigmaC_M	0.67	42.0	3.92e-01	100.0%	48.7%
2321116	53.1.1.0 ↗	beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral	0.66	48.0	4.49e-01	100.0%	61.0%
4231618	389.1.1.0 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin	0.56	40.0	3.88e-01	79.7%	76.8%
3546394	389.1.1.98 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA, cEGF	0.55	42.0	3.88e-01	91.5%	83.5%
4027395	389.1.1.160 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › PF29991	0.54	34.0	3.82e-01	72.9%	92.5%
3883215	389.6.1.4 ↗	few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › GF_recep_IV	0.54	45.0	2.75e-01	100.0%	15.2%
3215165	389.1.1.0 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin	0.54	33.0	3.83e-01	74.6%	92.5%
3853560	389.1.1.7 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA	0.53	38.0	3.83e-01	79.7%	100.0%
3211922	387.1.1.34 ↗	few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › EB	0.53	33.0	3.65e-01	71.2%	82.2%
3567480	389.6.1.4 ↗	few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › GF_recep_IV	0.53	43.0	2.41e-01	96.6%	6.5%
3276883	389.1.1.7 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA	0.53	38.0	3.72e-01	79.7%	96.9%
3539552	389.6.1.5 ↗	few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › Furin-like_2	0.52	43.0	3.07e-01	100.0%	36.3%
3771916	389.1.1.0 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin	0.52	33.0	3.75e-01	74.6%	95.0%
3991021	389.1.3.0 ↗	few secondary structure elements › EGF-like › EGF-related › TNF receptor-like	0.52	36.0	3.76e-01	74.6%	88.0%
3799321	389.1.1.0 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin	0.51	28.0	3.16e-01	76.3%	68.9%
3748090	389.1.1.17 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › FXa_inhibition	0.51	33.0	3.64e-01	71.2%	88.9%
4659288	389.6.1.5 ↗	few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › Furin-like_2	0.51	40.0	2.24e-01	94.9%	7.6%
3705749	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.50	40.0	2.37e-01	100.0%	58.6%
3797494	387.1.1.0 ↗	few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related	0.50	33.0	3.59e-01	72.9%	88.9%