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fiber

Euk-Vir

Fowl_aviadenovirus_6

fiber__YP_009505671__Fowl_aviadenovirus_6__172862

Identity

Accession:
YP_009505671 ↗
Protein ID:
fiber
Kingdom:
euk

Quality

72.7 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Aviadenovirus› Fowl_aviadenovirus_6

TaxID: 172862

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 88-191
PDB
Domain cluster: rep: fiber-2__YP_008719868__Turkey_aviadenovirus_5__1408258__D78-157
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF06536.17 best Av_adeno_fibre 62.1 5.00e-17 55.8% 100.0%
PF06536.17 Av_adeno_fibre 35.2 1.30e-08 43.3% 75.0%
D2 medium residues 312-401_494-518
PDB
Domain cluster: rep: fiber-1__YP_004346939__Fowl_aviadenovirus_C__190063__D215-278_348-359_391-420
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16812.11 best AdHead_fibreRBD 34.8 2.00e-08 98.3% 47.8%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vtwA00 2.60.90.30 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain 0.88 85.0 6.74e-01 100.0% 97.1%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.78 38.0 5.28e-01 100.0% 91.7%
2iumA00 2.60.90.30 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain 0.78 74.0 5.86e-01 100.0% 99.1%
1p4tA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.69 43.0 3.85e-01 100.0% 45.2%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.63 38.0 3.26e-01 99.1% 37.9%
2ervA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.62 42.0 3.81e-01 100.0% 52.0%
2wstA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.62 57.0 4.91e-01 100.0% 99.4%
1h7zA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.61 56.0 4.67e-01 99.1% 99.0%
3njtA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.61 39.0 2.83e-01 99.1% 25.0%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.60 30.0 2.99e-01 91.3% 43.1%
6g47A00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.59 54.0 4.70e-01 99.1% 99.4%
2bzvA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.58 53.0 4.90e-01 99.1% 99.3%
2vrsA03 2.60.90.40 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.55 49.0 4.72e-01 97.4% 100.0%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 30.0 3.49e-01 98.3% 84.2%
3pgbA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.50 44.0 2.95e-01 99.1% 72.7%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
199058 5092.1.1.5 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › AdHead_fibreRBD 0.88 85.0 6.74e-01 100.0% 97.1%
185806 5092.1.1.5 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › AdHead_fibreRBD 0.78 74.0 5.86e-01 100.0% 99.1%
2542700 5092.1.1.5 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › AdHead_fibreRBD 0.78 73.0 5.74e-01 100.0% 95.0%
2834097 5092.1.1.5 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › AdHead_fibreRBD 0.75 71.0 5.62e-01 100.0% 97.7%
3512269 79.1.1.16 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › DUF1983 0.68 37.0 4.19e-01 95.7% 68.9%
4025861 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.63 40.0 3.44e-01 98.3% 43.5%
5074212 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.58 33.0 3.37e-01 97.4% 55.5%
4955671 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.57 31.0 3.59e-01 98.3% 73.8%
1385851 5092.1.1.3 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Reo_sigmaC 0.56 51.0 4.86e-01 99.1% 100.0%
2034 12.3.1.2 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid 0.50 44.0 3.01e-01 100.0% 80.9%
143824 12.3.1.2 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid 0.50 44.0 2.99e-01 100.0% 79.0%
D3 medium residues 402-493
PDB