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fiber

Euk-Vir

Ovine_adenovirus_8

fiber__YP_010087275__Ovine_adenovirus_8__2601527

Identity

Accession:
YP_010087275 ↗
Protein ID:
fiber
Kingdom:
euk

Quality

68.4 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› Ovine_adenovirus_8

TaxID: 2601527

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 616-794
PDB
Domain cluster: rep: fiber__YP_009388329__Bat_mastadenovirus_WIV18__1986506__D438-570
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00541.25 best Adeno_knob 65.2 8.90e-18 100.0% 92.5%
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wstA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.83 76.0 7.69e-01 100.0% 96.6%
1h7zA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.81 77.0 7.56e-01 100.0% 96.9%
1kacA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.79 74.0 7.34e-01 100.0% 95.7%
2j2jA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.78 74.0 7.38e-01 100.0% 96.7%
1uxbA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.78 74.0 7.38e-01 100.0% 97.3%
2vtwA00 2.60.90.30 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain 0.77 72.0 6.89e-01 100.0% 94.1%
4en2A02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.76 38.0 4.95e-01 94.4% 83.7%
1h6eA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.74 37.0 4.79e-01 94.4% 82.9%
2r2cB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 30.0 3.77e-01 88.8% 63.3%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 20.0 3.22e-01 95.0% 61.3%
5dcaA08 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.68 30.0 3.84e-01 88.3% 68.2%
2vzsA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 31.0 3.95e-01 91.1% 75.2%
1g87A02 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.62 40.0 4.25e-01 95.0% 71.7%
3fbqA02 2.60.40.1640 Mainly Beta › Sandwich › Immunoglobulin-like › Conserved domain protein. 0.62 31.0 3.49e-01 100.0% 59.0%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 31.0 3.89e-01 96.6% 79.8%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.58 33.0 4.01e-01 92.7% 85.7%
1ej8A00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.58 34.0 3.85e-01 100.0% 73.6%
3hqxA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 32.0 3.99e-01 100.0% 93.3%
4n3tA00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.55 37.0 3.95e-01 100.0% 77.1%
3fbqA01 2.60.40.1630 Mainly Beta › Sandwich › Immunoglobulin-like › bacillus anthracis domain 0.54 37.0 4.07e-01 93.3% 87.5%
2waaA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 31.0 3.63e-01 91.1% 81.3%
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 35.0 3.72e-01 97.8% 78.3%
4zelB01 2.60.120.310 Mainly Beta › Sandwich › Jelly Rolls › Copper type II, ascorbate-dependent monooxygenase, N-terminal domain 0.51 34.0 3.70e-01 91.1% 81.9%
3bgaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 46.0 4.03e-01 100.0% 98.5%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 46.0 3.92e-01 99.4% 93.8%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 45.0 3.72e-01 100.0% 94.1%
3imhA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 45.0 3.73e-01 100.0% 91.9%
1lurA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 46.0 3.76e-01 100.0% 96.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
140191 5092.1.1.1 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Adeno_knob 0.83 76.0 7.69e-01 100.0% 96.6%
2670467 5092.1.1.1 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Adeno_knob 0.79 75.0 7.12e-01 100.0% 92.7%
359427 5092.1.1.1 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Adeno_knob 0.78 73.0 7.27e-01 100.0% 94.6%
199058 5092.1.1.5 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › AdHead_fibreRBD 0.77 72.0 6.89e-01 100.0% 94.1%
4022701 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.73 36.0 4.69e-01 95.5% 84.0%
146266 295.1.1.8 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3276 0.71 21.0 3.05e-01 95.0% 54.8%
3936017 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.71 32.0 4.04e-01 100.0% 69.1%
3783394 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.70 39.0 4.67e-01 94.4% 80.0%
3226414 11.1.3.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like 0.69 34.0 2.42e-01 100.0% 16.5%
3678112 11.1.1.45 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 0.63 29.0 3.58e-01 90.5% 67.3%
3901921 11.1.1.538 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CHRD 0.61 30.0 3.59e-01 97.8% 67.2%
None — 0.52 41.0 3.85e-01 100.0% 67.9%
4660347 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.52 47.0 3.96e-01 100.0% 90.8%
5048322 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.51 41.0 4.10e-01 100.0% 82.2%
168139 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.51 46.0 3.99e-01 100.0% 94.3%
D2 medium residues 32-104
PDB
Domain cluster: rep: fiber__YP_009246439__Bat_mastadenovirus_WIV11__1788433__D45-98
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s6xA01 6.20.10.20 Special › Other non-globular › Laminin › 0.70 45.0 4.61e-01 83.6% 68.1%
1v1hB00 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.54 48.0 4.32e-01 100.0% 76.2%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2321116 53.1.1.0 ↗ beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral 0.65 45.0 4.44e-01 87.7% 68.8%
213988 53.1.1.0 ↗ beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral 0.56 38.0 3.87e-01 89.0% 70.3%
3762208 389.1.1.7 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA 0.50 37.0 3.88e-01 83.6% 100.0%
D3 medium residues 412-463
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gu4A01 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.68 47.0 4.98e-01 73.1% 93.0%
3s6xA01 6.20.10.20 Special › Other non-globular › Laminin › 0.66 50.0 4.61e-01 88.5% 63.8%
3k9xC02 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.53 39.0 4.13e-01 90.4% 100.0%
2dduA02 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.51 32.0 3.56e-01 78.8% 94.3%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2321116 53.1.1.0 ↗ beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral 0.67 51.0 4.53e-01 88.5% 57.1%
3861915 389.6.1.4 ↗ few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › GF_recep_IV 0.59 47.0 3.15e-01 94.2% 25.1%
3559921 389.1.1.98 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA, cEGF 0.58 39.0 3.89e-01 71.2% 100.0%
3875314 389.1.1.17 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › FXa_inhibition 0.56 40.0 3.99e-01 80.8% 100.0%
3525132 389.1.1.7 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA 0.55 39.0 3.75e-01 75.0% 91.7%
3748090 389.1.1.17 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › FXa_inhibition 0.53 40.0 4.13e-01 86.5% 97.8%
3929611 389.2.1.0 ↗ few secondary structure elements › EGF-like › Serine protease inhibitors › Serine protease inhibitors 0.52 37.0 3.46e-01 76.9% 91.3%
3938864 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.51 37.0 3.93e-01 80.8% 100.0%
4077542 389.1.1.17 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › FXa_inhibition 0.51 38.0 3.84e-01 84.6% 90.0%
3211932 389.1.1.29 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EB 0.51 33.0 3.54e-01 75.0% 87.5%