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fiber_protein

Euk-Vir

bat_adenovirus_3

fiber_protein__YP_005271200__bat_adenovirus_3__2758098

Identity

Accession:
YP_005271200 ↗
Protein ID:
fiber_protein
Kingdom:
euk

Quality

77.4 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› bat_adenovirus_3

TaxID: 2758098

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 353-417_448-472_539-555
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00541.25 best Adeno_knob 46.9 3.70e-12 55.1% 29.0%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2j2jA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.96 78.0 6.25e-01 83.2% 100.0%
2wstA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.87 70.0 5.75e-01 83.2% 100.0%
1uxbA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.87 69.0 5.59e-01 82.2% 100.0%
1kacA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.87 69.0 5.56e-01 82.2% 98.4%
1h7zA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.82 66.0 5.27e-01 83.2% 100.0%
2bzvA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.81 63.0 5.62e-01 81.3% 100.0%
6g47A00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.77 61.0 5.12e-01 82.2% 100.0%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.76 37.0 4.89e-01 79.4% 85.0%
2iumA00 2.60.90.30 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain 0.72 58.0 4.53e-01 84.1% 100.0%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.70 38.0 4.93e-01 80.4% 96.6%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.62 34.0 3.51e-01 82.2% 53.8%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 40.0 3.59e-01 89.7% 48.4%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.54 37.0 3.37e-01 96.3% 51.0%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 32.0 3.66e-01 85.0% 84.2%
1rwhA02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 41.0 3.01e-01 84.1% 56.1%
1hn0A03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 40.0 2.92e-01 83.2% 54.1%
7r2xA02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 40.0 2.94e-01 83.2% 56.4%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
359427 5092.1.1.1 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Adeno_knob 0.94 79.0 6.34e-01 86.9% 100.0%
140191 5092.1.1.1 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Adeno_knob 0.87 70.0 5.75e-01 83.2% 100.0%
2670467 5092.1.1.1 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Adeno_knob 0.85 69.0 5.40e-01 84.1% 96.1%
352878 5092.1.1.1 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Adeno_knob 0.82 68.0 5.40e-01 86.9% 100.0%
3074009 9.1.1.31 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › VtrC 0.73 44.0 4.12e-01 86.0% 48.9%
3402405 4.1.1.326 ↗ beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.70 34.0 4.27e-01 79.4% 77.8%
5007185 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.69 41.0 3.66e-01 84.1% 43.4%
3968293 71.2.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › DUF3108 0.66 38.0 3.00e-01 86.0% 28.6%
3588663 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.65 37.0 3.89e-01 85.0% 62.1%
5033173 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.64 35.0 3.50e-01 87.9% 50.5%
4056787 9.1.1.9 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeT 0.64 38.0 3.24e-01 85.0% 35.0%
4825040 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.60 34.0 3.17e-01 95.3% 41.5%
4955671 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.59 35.0 3.97e-01 90.7% 78.8%
4025179 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.58 43.0 3.45e-01 98.1% 40.5%
3464481 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.54 42.0 2.83e-01 91.6% 23.5%
5076441 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.53 38.0 2.86e-01 93.5% 30.4%
3965134 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 38.0 3.71e-01 90.7% 68.7%
4641533 3692.1.1.1 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.53 38.0 3.64e-01 97.2% 64.0%
5074212 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.53 32.0 3.26e-01 87.9% 60.0%
3428522 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.51 35.0 2.69e-01 82.2% 31.2%
4940718 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 3.04e-01 95.3% 67.4%
3669098 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.50 36.0 2.67e-01 83.2% 30.4%
D2 medium residues 418-447_473-538
PDB
Domain cluster: rep: fiber__YP_009388329__Bat_mastadenovirus_WIV18__1986506__D438-570
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00541.25 best Adeno_knob 43.9 3.00e-11 100.0% 58.1%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2j2jA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.92 89.0 6.92e-01 100.0% 64.8%
1uxbA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.82 78.0 6.10e-01 100.0% 65.2%
2wstA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.76 71.0 5.69e-01 100.0% 66.5%
2vouA02 3.30.9.60 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › 0.59 39.0 3.42e-01 95.8% 44.9%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 47.0 4.09e-01 89.6% 63.7%
4jf6A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 46.0 3.43e-01 87.5% 86.6%
2fujA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 36.0 3.43e-01 92.7% 53.4%
4r7kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 48.0 3.94e-01 95.8% 75.0%
3snoA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.54 45.0 4.19e-01 89.6% 100.0%
1oj5A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 43.0 4.19e-01 87.5% 100.0%
2i9yA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 47.0 3.97e-01 97.9% 84.1%
4i0wD02 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.80e-01 100.0% 63.1%
3cgbA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.52 34.0 3.29e-01 95.8% 57.3%
5tfqA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 42.0 3.12e-01 89.6% 85.9%
3p51A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 44.0 3.88e-01 93.8% 82.1%
1tw0A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 46.0 3.87e-01 95.8% 80.9%
2fa1A00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.52 45.0 3.75e-01 92.7% 61.6%
1fm4A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 45.0 3.83e-01 95.8% 80.5%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.52 33.0 3.17e-01 95.8% 54.9%
2vneA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 46.0 3.84e-01 96.9% 79.1%
2yh6D00 3.30.530.50 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.52 43.0 4.12e-01 92.7% 82.7%
6kjuB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 41.0 3.92e-01 89.6% 92.3%
2nwiB00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.51 42.0 3.60e-01 90.6% 56.2%
4fvkA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.50 41.0 2.81e-01 89.6% 93.5%
2wqlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 42.0 3.70e-01 95.8% 82.9%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
359427 5092.1.1.1 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Adeno_knob 0.92 89.0 6.84e-01 100.0% 63.4%
2670467 5092.1.1.1 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Adeno_knob 0.84 80.0 6.02e-01 100.0% 64.1%
140191 5092.1.1.1 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Adeno_knob 0.76 71.0 5.69e-01 100.0% 66.5%
3913066 223.2.1.36 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_3 0.62 53.0 4.24e-01 91.7% 77.6%
3759236 223.1.1.77 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Intu_longin_3 0.61 53.0 4.33e-01 92.7% 85.9%
4496784 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.60 51.0 3.82e-01 93.8% 90.4%
3600592 223.2.1.20 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.59 47.0 3.90e-01 88.5% 55.0%
3654824 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.58 41.0 3.82e-01 96.9% 59.2%
4927645 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 46.0 4.41e-01 88.5% 93.9%
3643040 284.2.1.3 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Maf1 0.56 41.0 4.61e-01 89.6% 100.0%
4652688 504.1.1.1 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB 0.56 43.0 3.80e-01 93.8% 55.7%
4065005 881.1.1.34 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF27181 0.56 49.0 3.89e-01 96.9% 51.8%
4951932 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.55 44.0 3.16e-01 87.5% 35.0%
1770212 244.2.1.1 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.55 37.0 3.41e-01 97.9% 53.6%
2330704 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.54 46.0 3.14e-01 96.9% 34.0%
5069076 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.54 38.0 3.54e-01 89.6% 58.3%
4199388 504.1.1.1 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB 0.54 43.0 3.71e-01 93.8% 55.9%
4971321 244.2.1.1 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.54 37.0 3.36e-01 97.9% 52.3%
3332822 331.3.1.1 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 0.54 47.0 4.06e-01 96.9% 83.0%
4962490 244.2.1.1 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.54 37.0 3.41e-01 97.9% 54.4%
4952370 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 45.0 3.80e-01 91.7% 57.4%
3293210 331.3.1.1 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 0.53 46.0 3.87e-01 95.8% 80.6%
4012748 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.53 44.0 3.18e-01 94.8% 36.5%
5055900 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.53 42.0 3.73e-01 87.5% 75.7%
3588902 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 42.0 3.73e-01 91.7% 60.0%
3590351 814.1.1.3 ↗ a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › UTRA 0.52 44.0 3.81e-01 90.6% 62.8%
3186853 881.1.1.2 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 0.52 44.0 3.55e-01 93.8% 60.0%
5005783 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 43.0 3.57e-01 92.7% 55.9%
3658727 331.3.1.1 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 0.52 45.0 3.79e-01 96.9% 82.4%
5049432 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.51 42.0 2.93e-01 91.7% 92.6%
3611951 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.51 44.0 3.39e-01 95.8% 69.3%
3581565 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 44.0 3.72e-01 95.8% 68.3%
3461242 331.4.1.1 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.51 42.0 4.04e-01 90.6% 82.7%
4060852 331.3.1.67 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF28956 0.51 44.0 3.49e-01 96.9% 75.5%
3175088 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.51 44.0 3.71e-01 96.9% 77.0%
3330462 331.3.1.1 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 0.50 43.0 3.73e-01 95.8% 83.8%
4101946 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.50 44.0 3.68e-01 96.9% 77.6%
5041562 331.3.1.26 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2867 0.50 43.0 3.67e-01 95.8% 80.0%
4026379 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.50 44.0 3.85e-01 100.0% 88.0%
3668216 331.3.1.1 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 0.50 44.0 3.73e-01 96.9% 80.6%