←Back to structures

fibrinogen_C-terminal_domain-like_motif_protein

Euk-Vir

Ranid_herpesvirus_3

fibrinogen_C-terminal_domain-like_motif_protein__YP_009362324__Ranid_herpesvirus_3__1987509

Identity

Accession:
YP_009362324 ↗
Protein ID:
fibrinogen_C-terminal_domain-like_motif_protein
Kingdom:
euk

Quality

53.8 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Alloherpesviridae› Batravirus› Ranid_herpesvirus_3

TaxID: 1987509

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-20_189-368
PDB
Domain cluster: rep: isomerase_motif_protein__YP_009362317__Ranid_herpesvirus_3__1987509__D187-355
D2 high residues 43-171
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5zc1D00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 47.0 5.21e-01 73.6% 95.9%
6x05A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 45.0 3.27e-01 73.6% 53.8%
1avgI00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 44.0 4.30e-01 72.9% 81.0%
1o7dD01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.59 44.0 3.49e-01 77.5% 93.1%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.57 42.0 4.06e-01 76.7% 91.7%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 38.0 3.75e-01 72.1% 87.2%
3oblA00 2.40.128.450 Mainly Beta › Beta Barrel › Lipocalin › 0.54 43.0 4.30e-01 85.3% 91.7%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 39.0 3.66e-01 76.0% 83.9%
2bhoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 34.0 3.73e-01 76.7% 79.1%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3780296 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.67 46.0 5.21e-01 72.1% 94.7%
3273324 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.64 46.0 3.18e-01 74.4% 95.1%
4225063 3840.1.1.2 ↗ a+b two layers › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › PerB 0.62 37.0 3.95e-01 73.6% 67.3%
3208314 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.62 44.0 2.83e-01 72.9% 87.9%
3990149 9.1.1.12 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.62 39.0 4.29e-01 83.7% 78.6%
3184801 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.61 43.0 3.03e-01 72.1% 72.5%
3540942 883.1.1.10 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › SMP_C2CD2L 0.61 48.0 4.23e-01 83.7% 94.7%
3214007 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.59 41.0 4.25e-01 82.2% 73.6%
3637832 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.56 42.0 2.86e-01 76.7% 95.8%
3431417 9.2.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF2921_N 0.56 42.0 4.11e-01 78.3% 75.7%
3208232 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 42.0 2.84e-01 79.1% 96.2%
1724304 9.1.1.30 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF_like 0.56 41.0 4.50e-01 77.5% 100.0%
3217505 9.1.1.55 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7045 0.55 41.0 4.33e-01 77.5% 100.0%
3404972 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 47.0 3.20e-01 96.1% 92.7%
4951146 71.1.1.8 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.53 40.0 3.42e-01 78.3% 90.5%
3997324 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 38.0 3.59e-01 75.2% 80.6%
4638995 71.1.1.15 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › UCP033729 0.53 39.0 3.44e-01 77.5% 88.7%
4370667 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.52 42.0 3.11e-01 85.3% 88.8%
3205376 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 39.0 2.76e-01 79.8% 99.8%
4643894 9.1.1.8 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PA_decarbox 0.51 39.0 3.63e-01 79.1% 85.6%
3174930 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.51 38.0 3.82e-01 77.5% 78.5%
3412551 4.1.1.326 ↗ beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.51 28.0 3.44e-01 82.2% 90.5%
4507137 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.50 43.0 2.89e-01 93.8% 98.6%