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flap_endonuclease_1
Euk-VirPithovirus_sibericum
flap_endonuclease_1__YP_009001352__Pithovirus_sibericum__1450746
Identity
- Accession:
- YP_009001352 ↗
- Protein ID:
- flap_endonuclease_1
- Kingdom:
- euk
Quality
78.4
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Pithoviridae›
Alphapithovirus›
Pithovirus_sibericum
TaxID: 1450746
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-232
Domain cluster:
rep: 125R__YP_009552406__Cherax_quadricarinatus_iridovirus__2035708__D21-256
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00752.24 best | XPG_N | 30.8 | 4.70e-07 | 48.5% | 85.2% |
| PF00867.24 | XPG_I | 44.9 | 1.70e-11 | 28.6% | 59.1% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5v07Z01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.86 | 74.0 | 7.75e-01 | 100.0% | 97.1% |
| 1a76A01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.73 | 63.0 | 6.61e-01 | 100.0% | 98.6% |
| 5buqA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.68 | 30.0 | 2.51e-01 | 89.0% | 24.4% |
| 4gicA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.58 | 32.0 | 3.89e-01 | 81.9% | 82.6% |
| 5h5mA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.53 | 31.0 | 4.00e-01 | 74.4% | 100.0% |
| 2gm3A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 33.0 | 3.99e-01 | 81.9% | 92.2% |
| 1yc9A01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.52 | 37.0 | 3.31e-01 | 73.1% | 92.4% |
ECOD (74)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3937112 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.87 | 75.0 | 7.16e-01 | 100.0% | 78.4% |
| 3472483 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.87 | 75.0 | 6.59e-01 | 100.0% | 64.8% |
| None | — | 0.86 | 78.0 | 8.01e-01 | 100.0% | 96.8% | |
| 3808902 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.86 | 65.0 | 7.29e-01 | 100.0% | 96.7% |
| 4001799 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.86 | 74.0 | 7.01e-01 | 100.0% | 77.6% |
| 3701288 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.86 | 78.0 | 7.96e-01 | 100.0% | 96.8% |
| 4237276 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.85 | 74.0 | 7.70e-01 | 100.0% | 96.2% |
| 3784928 | 2006.1.4.32 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N, MKT1_N | 0.85 | 70.0 | 6.84e-01 | 100.0% | 78.0% |
| 3170744 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.85 | 73.0 | 6.57e-01 | 100.0% | 67.8% |
| 3789016 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.85 | 83.0 | 7.46e-01 | 100.0% | 94.1% |
| 4020826 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.85 | 72.0 | 6.94e-01 | 100.0% | 78.4% |
| 3335892 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.85 | 74.0 | 6.83e-01 | 100.0% | 73.2% |
| 3823952 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.84 | 72.0 | 6.80e-01 | 98.2% | 75.5% |
| 4426402 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.84 | 75.0 | 7.69e-01 | 100.0% | 95.5% |
| 3484303 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.84 | 66.0 | 7.27e-01 | 100.0% | 95.8% |
| 3744314 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.84 | 72.0 | 6.67e-01 | 100.0% | 72.7% |
| 3610118 | 2006.1.4.46 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N, XPG_I, XPG_I_2 | 0.84 | 75.0 | 6.85e-01 | 100.0% | 73.6% |
| 3875510 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.84 | 72.0 | 7.54e-01 | 100.0% | 95.7% |
| 4021778 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.84 | 81.0 | 7.35e-01 | 100.0% | 93.8% |
| 3514116 | 2006.1.4.34 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N, XPG_I_2 | 0.84 | 70.0 | 6.76e-01 | 100.0% | 78.0% |
| 4028970 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.84 | 74.0 | 7.02e-01 | 100.0% | 79.1% |
| 3882124 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.84 | 65.0 | 6.74e-01 | 100.0% | 84.2% |
| 4028346 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.83 | 80.0 | 7.08e-01 | 100.0% | 96.8% |
| 4024047 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.83 | 78.0 | 7.80e-01 | 100.0% | 96.5% |
| 3913336 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.83 | 64.0 | 7.10e-01 | 100.0% | 97.3% |
| 3581443 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.82 | 74.0 | 6.58e-01 | 100.0% | 69.2% |
| 3874759 | 2006.1.4.35 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PF27242 | 0.82 | 73.0 | 6.32e-01 | 100.0% | 64.0% |
| 3755557 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.82 | 72.0 | 7.12e-01 | 100.0% | 86.7% |
| 4589814 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.81 | 78.0 | 7.63e-01 | 100.0% | 96.7% |
| 3393840 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.81 | 77.0 | 7.68e-01 | 100.0% | 97.0% |
| 3733625 | 2006.1.4.28 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › MKT1_N | 0.81 | 70.0 | 6.73e-01 | 100.0% | 80.4% |
| 5055638 | 2006.1.4.19 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N | 0.81 | 70.0 | 7.31e-01 | 100.0% | 96.7% |
| 4395983 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.81 | 74.0 | 7.55e-01 | 100.0% | 97.7% |
| 3919202 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.81 | 72.0 | 5.90e-01 | 100.0% | 55.0% |
| 4964944 | 2006.1.4.25 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I | 0.81 | 70.0 | 7.34e-01 | 100.0% | 97.1% |
| 4946948 | 2006.1.4.25 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I | 0.80 | 73.0 | 7.47e-01 | 100.0% | 97.3% |
| 4956546 | 2006.1.4.25 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I | 0.80 | 72.0 | 7.41e-01 | 100.0% | 97.7% |
| 3937732 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.80 | 61.0 | 6.67e-01 | 100.0% | 92.6% |
| 4933316 | 2006.1.4.25 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I | 0.80 | 74.0 | 7.47e-01 | 100.0% | 96.4% |
| 3477276 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.80 | 77.0 | 7.63e-01 | 100.0% | 97.4% |
| 3743690 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.80 | 58.0 | 6.56e-01 | 100.0% | 94.9% |
| 3599611 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.80 | 74.0 | 6.76e-01 | 100.0% | 76.8% |
| 3683988 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.79 | 69.0 | 7.16e-01 | 100.0% | 95.3% |
| 4264908 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.79 | 69.0 | 7.09e-01 | 100.0% | 94.4% |
| 3518745 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.79 | 56.0 | 5.63e-01 | 100.0% | 72.0% |
| 3718837 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.79 | 75.0 | 6.76e-01 | 100.0% | 76.0% |
| 4927168 | 2006.1.4.19 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N | 0.79 | 71.0 | 7.29e-01 | 100.0% | 97.3% |
| 3238117 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.79 | 65.0 | 7.00e-01 | 100.0% | 98.5% |
| 3428426 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.78 | 66.0 | 6.98e-01 | 100.0% | 95.6% |
| 3721945 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.78 | 61.0 | 6.75e-01 | 99.1% | 98.4% |
| 3486531 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.77 | 74.0 | 6.99e-01 | 100.0% | 86.5% |
| 3205760 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.77 | 74.0 | 7.02e-01 | 100.0% | 96.5% |
| 5041361 | 2006.1.4.25 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I | 0.77 | 51.0 | 6.20e-01 | 100.0% | 98.7% |
| 3938152 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.76 | 65.0 | 6.81e-01 | 100.0% | 97.1% |
| 3594943 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.76 | 71.0 | 6.50e-01 | 100.0% | 77.6% |
| 5044998 | 2006.1.4.25 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I | 0.76 | 65.0 | 6.81e-01 | 100.0% | 97.1% |
| 3627555 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.75 | 63.0 | 6.70e-01 | 100.0% | 96.6% |
| 3416420 | 2006.1.4.52 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PF27698 | 0.75 | 72.0 | 5.33e-01 | 100.0% | 47.8% |
| 3868746 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.75 | 68.0 | 6.02e-01 | 100.0% | 68.4% |
| 3520565 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.75 | 72.0 | 7.11e-01 | 100.0% | 97.4% |
| 3893248 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.74 | 68.0 | 5.09e-01 | 100.0% | 41.7% |
| 3613309 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.72 | 64.0 | 6.51e-01 | 100.0% | 92.9% |
| 3182237 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.72 | 61.0 | 6.48e-01 | 100.0% | 99.0% |
| 4979225 | 2006.1.4.25 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I | 0.72 | 61.0 | 6.48e-01 | 99.6% | 99.5% |
| 5072240 | 2006.1.4.25 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I | 0.71 | 60.0 | 6.45e-01 | 99.6% | 99.5% |
| 142326 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.71 | 65.0 | 6.53e-01 | 100.0% | 95.6% |
| 5049771 | 2006.1.4.25 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I | 0.70 | 66.0 | 6.65e-01 | 100.0% | 98.2% |
| 3641274 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.70 | 67.0 | 6.18e-01 | 100.0% | 98.9% |
| 3781390 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.68 | 61.0 | 6.32e-01 | 100.0% | 98.6% |
| 3223707 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.68 | 64.0 | 6.32e-01 | 100.0% | 93.8% |
| 5012672 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.68 | 23.0 | 3.84e-01 | 75.3% | 81.1% |
| 4994951 | 2006.1.4.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 | 0.67 | 39.0 | 5.09e-01 | 89.4% | 100.0% |
| 3176999 | 2006.1.4.25 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I | 0.64 | 61.0 | 6.06e-01 | 100.0% | 97.9% |
| 3584243 | 2006.1.4.25 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I | 0.53 | 30.0 | 3.97e-01 | 92.1% | 96.2% |
D2
high
residues 234-300
Domain cluster:
rep: IMGVR_UViG_3300002053_001336-3300002053-SMTZ23_100214334__D204-271