fusion_protein

Euk-Vir

Zostera_marina_amalgavirus_2

fusion_protein__YP_009362304__Zostera_marina_amalgavirus_2__1985203

Identity

70.1 mean pLDDT

Orthornavirae› Pisuviricota› Duplopiviricetes› Durnavirales› Amalgaviridae› Amalgavirus› Zostera_marina_amalgavirus_2

TaxID: 1985203

View cluster (8 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-133

PDB

Domain cluster: rep: putative_fusion_protein__YP_003868436__Rhododendron_virus_A__878260__D37-144

D2 high residues 293-343

PDB

D3 medium residues 141-171_205-274

PDB

D4 medium residues 362-405_443-473_571-714

PDB

Domain cluster: rep: hypothetical_protein_3__YP_009336917__Hubei_toti-like_virus_17__1923305__D93-140_272-388

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	48.3	8.90e-13	63.9%	24.7%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3e9lA02	1.20.80.40	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region	0.59	22.0	3.39e-01	85.8%	80.0%
2ahoB03	3.30.70.1130	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha	0.58	18.0	2.92e-01	78.1%	70.5%
3hheA02	3.30.70.260	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain	0.51	16.0	2.68e-01	75.8%	75.6%
5mmjh01	3.30.1370.30	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 ›	0.51	17.0	2.94e-01	76.3%	88.0%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3193439	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.58	54.0	4.82e-01	98.2%	71.0%
3284992	3016.1.1.0 ↗	a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases	0.58	19.0	2.89e-01	79.0%	67.0%
3737536	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.56	51.0	4.56e-01	96.3%	71.4%
3483524	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.55	51.0	4.53e-01	100.0%	75.4%
3498557	304.48.1.87 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › PF28514	0.51	45.0	4.36e-01	93.2%	87.8%
5072579	7523.1.1.0 ↗	a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II	0.51	21.0	2.77e-01	76.7%	64.2%

D5 medium residues 474-570_1039-1062

PDB

Domain cluster: representative

D6 medium residues 767-827

PDB

D7 medium residues 841-1007

PDB