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fusion_protein
Euk-VirSpinach_amalgavirus_1
fusion_protein__YP_009388304__Spinach_amalgavirus_1__1985164
Identity
- Accession:
- YP_009388304 ↗
- Protein ID:
- fusion_protein
- Kingdom:
- euk
Quality
70.4
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Duplopiviricetes›
Durnavirales›
Amalgaviridae›
Amalgavirus›
Spinach_amalgavirus_1
TaxID: 1985164
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-127
Domain cluster:
rep: putative_fusion_protein__YP_003868436__Rhododendron_virus_A__878260__D37-144
D2
high
residues 759-808
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dmkA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 3.66e-01 | 100.0% | 55.3% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3444605 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.57 | 49.0 | 4.69e-01 | 100.0% | 95.0% |
| 4418638 | 10.12.1.107 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF27522 | 0.56 | 46.0 | 2.97e-01 | 100.0% | 94.5% |
| 162283 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.54 | 44.0 | 3.45e-01 | 100.0% | 44.9% |
| 3923498 | 10.32.1.5 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ephrin_lbd | 0.54 | 43.0 | 3.12e-01 | 100.0% | 38.9% |
| 3667092 | 3792.1.1.3 ↗ | beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › RPN1_C | 0.53 | 41.0 | 3.67e-01 | 94.0% | 58.7% |
| 3261322 | 11.1.1.214 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Pur_ac_phosph_N | 0.53 | 43.0 | 3.55e-01 | 98.0% | 61.0% |
| 3485058 | 10.32.1.5 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ephrin_lbd | 0.51 | 41.0 | 3.01e-01 | 100.0% | 39.4% |
D3
high
residues 831-995
D4
medium
residues 170-268_288-336
Domain cluster:
representative
D5
medium
residues 374-577_614-677
Domain cluster:
rep: RNA-dependent_RNA-polymerase_-RdRp-__YP_004429254__Grapevine_Bulgarian_latent_virus__748667__D66-229_264-320
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2r7rA05 | 1.10.357.80 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.69 | 45.0 | 5.44e-01 | 82.8% | 98.3% |
| 5l3wA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.60 | 17.0 | 3.14e-01 | 90.3% | 78.6% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.60 | 15.0 | 2.78e-01 | 81.7% | 65.9% |
D6
medium
residues 578-613_678-757