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fusion_protein_p122

Euk-Vir

Southern_tomato_virus

fusion_protein_p122__YP_002321509__Southern_tomato_virus__591166

Identity

Accession:
YP_002321509 ↗
Protein ID:
fusion_protein_p122
Kingdom:
euk

Quality

78.3 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Duplopiviricetes› Durnavirales› Amalgaviridae› Amalgavirus› Southern_tomato_virus

TaxID: 591166

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 188-273
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009551562__Anthoxanthum_odoratum_amalgavirus_1__2065797__D197-273
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1omsA00 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.65 53.0 4.81e-01 88.4% 93.9%
2qguA02 1.10.10.640 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › phospholipid-binding protein 0.59 32.0 3.43e-01 70.9% 59.0%
7dg2C01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.58 28.0 3.04e-01 74.4% 52.0%
2nscA01 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.56 41.0 4.28e-01 81.4% 98.7%
3ihmA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 41.0 3.12e-01 79.1% 42.8%
3u4qB04 6.10.140.1030 Special › Helix non-globular › Helix Hairpins › 0.54 27.0 2.99e-01 97.7% 58.0%
2w02B06 1.10.340.60 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › AcsD, palm domain, helix bundle 0.53 34.0 3.37e-01 89.5% 60.9%
1enwA00 1.10.472.30 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Transcription elongation factor S-II, central domain 0.51 30.0 2.81e-01 73.3% 43.0%
3l8kA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 41.0 3.17e-01 94.2% 94.5%
3q5dA02 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.50 37.0 3.59e-01 95.3% 70.1%
3kflA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.50 35.0 2.84e-01 95.3% 36.0%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4194796 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.62 52.0 4.63e-01 93.0% 88.8%
4043299 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.62 52.0 4.71e-01 91.9% 94.8%
4289692 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.61 48.0 4.40e-01 88.4% 90.8%
4248927 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.60 49.0 4.45e-01 93.0% 86.4%
4164698 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.60 50.0 4.64e-01 91.9% 97.3%
5004369 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.59 43.0 2.91e-01 76.7% 78.7%
3331227 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.57 35.0 3.83e-01 84.9% 78.5%
4215070 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.57 46.0 4.43e-01 88.4% 98.0%
3168927 304.48.1.104 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Ty3_capsid 0.57 37.0 3.87e-01 76.7% 71.2%
3482583 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 41.0 3.84e-01 76.7% 70.5%
3642946 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.55 36.0 3.74e-01 82.6% 71.2%
2141970 1131.1.1.1 ↗ extended segments › Mitochondrial complex I, B14.5b subunit › Mitochondrial complex I, B14.5b subunit › Mitochondrial complex I, B14.5b subunit › NDUF_C2 0.54 40.0 3.76e-01 80.2% 63.7%
2984622 3396.1.1.1 ↗ extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG_1_N 0.53 37.0 4.00e-01 83.7% 89.9%
3527324 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.53 45.0 4.04e-01 98.8% 72.8%
3465231 192.15.1.189 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Frigida 0.52 35.0 3.64e-01 89.5% 75.0%
3260332 5069.1.1.7 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.51 39.0 3.16e-01 82.6% 78.2%
3260703 142.1.1.5 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI 0.50 34.0 3.48e-01 73.3% 73.8%
D2 medium residues 22-157
PDB
Domain cluster: rep: putative_fusion_protein__YP_003868436__Rhododendron_virus_A__878260__D37-144
D3 medium residues 356-437_526-560
PDB
Domain cluster: rep: fusion_protein__YP_003934623__Blueberry_latent_virus__430710__D338-371_404-429_518-548
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4234747 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.52 19.0 2.58e-01 72.6% 60.3%
D4 medium residues 438-481_603-665_732-761
PDB
Domain cluster: representative
D5 medium residues 482-525_561-581_666-682
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f0jA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.59 44.0 2.91e-01 79.3% 58.7%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.54 40.0 3.85e-01 78.0% 80.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3638063 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.51 37.0 3.35e-01 75.6% 97.3%
D6 medium residues 582-602_683-731
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ra6A02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.82 64.0 5.49e-01 82.9% 72.6%
5jxsA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.78 72.0 5.60e-01 100.0% 61.3%
3l44A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 45.0 3.34e-01 84.3% 63.9%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.55 48.0 3.01e-01 97.1% 78.2%
2yxoB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.54 37.0 2.51e-01 70.0% 50.9%
3g7kB02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 39.0 2.86e-01 75.7% 42.0%
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 39.0 3.62e-01 77.1% 92.1%
3tcrA00 3.40.980.10 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain 0.51 45.0 3.52e-01 100.0% 55.1%
4ag6A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 2.99e-01 94.3% 50.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1173784 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.85 78.0 4.79e-01 100.0% 37.4%
5022739 304.48.1.28 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Csm1_B 0.71 48.0 3.50e-01 70.0% 36.8%
3604349 304.48.1.28 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Csm1_B 0.69 46.0 3.34e-01 70.0% 28.2%
4396408 304.20.1.5 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › tRNA_synt_2f 0.68 46.0 3.24e-01 70.0% 22.3%
4549024 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.66 45.0 3.83e-01 70.0% 53.5%
4978945 1036.1.1.1 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.66 42.0 3.64e-01 84.3% 41.8%
3935908 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.65 42.0 3.50e-01 70.0% 36.8%
3682008 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 32.0 2.62e-01 74.3% 27.4%
3511708 859.1.1.1 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA 0.64 44.0 3.08e-01 70.0% 68.4%
3733109 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.61 43.0 2.82e-01 72.9% 33.5%
4184822 2002.1.1.69 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase 0.60 47.0 2.73e-01 84.3% 36.9%
5039275 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.59 39.0 2.33e-01 70.0% 55.8%
5041799 2008.1.1.220 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_10 0.56 38.0 3.05e-01 70.0% 85.7%
3672161 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.56 31.0 2.03e-01 75.7% 12.7%
3591105 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 38.0 2.64e-01 72.9% 37.5%
4616680 7577.1.1.2 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 0.54 45.0 2.88e-01 95.7% 39.7%
3298201 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 34.0 3.42e-01 81.4% 64.3%
3620169 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.50 36.0 2.82e-01 74.3% 54.3%
D7 medium residues 762-831
PDB
Domain cluster: rep: fusion_protein__YP_009388304__Spinach_amalgavirus_1__1985164__D759-808
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5aca300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 3.15e-01 90.0% 37.8%
7jsdA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.55 44.0 3.09e-01 100.0% 25.4%
2dmkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.51e-01 78.6% 59.2%
2qg3A00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.53 43.0 3.34e-01 100.0% 77.8%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4136946 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.60 44.0 3.49e-01 80.0% 97.4%
3444605 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.60 44.0 4.66e-01 77.1% 100.0%
3936261 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.56 39.0 3.75e-01 90.0% 62.7%
5010050 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 3.61e-01 80.0% 61.9%
3231688 10.32.1.180 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CEP104_N 0.55 43.0 3.44e-01 90.0% 51.0%
162283 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 39.0 3.29e-01 78.6% 48.0%
3495270 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 38.0 3.40e-01 78.6% 56.4%
None — 0.53 37.0 2.27e-01 77.1% 23.8%
3781150 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.05e-01 78.6% 52.4%
3900454 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.48e-01 82.9% 61.9%
4588326 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.30e-01 87.1% 57.8%
4142146 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 36.0 3.33e-01 78.6% 70.0%
3273083 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 37.0 3.33e-01 77.1% 62.1%