←Back to structures
gag
Euk-VirDesmodus_rotundus_endogenous_retrovirus
gag__YP_009140128__Desmodus_rotundus_endogenous_retrovirus__1622024
Identity
- Accession:
- YP_009140128 ↗
- Protein ID:
- gag
- Kingdom:
- euk
Quality
56.6
mean pLDDT
Taxonomy
Pararnavirae›
Artverviricota›
Revtraviricetes›
Ortervirales›
Retroviridae›
Betaretrovirus›
Desmodus_rotundus_endogenous_retrovirus
TaxID: 1622024
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-114_186-198
Domain cluster:
rep: putative_group-specific_antigen__YP_009243639__Bovine_retrovirus_CH15__1822365__D9-108
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02337.23 best | Gag_p10 | 78.5 | 4.20e-22 | 70.2% | 97.7% |
D2
high
residues 366-481
Domain cluster:
rep: gag__YP_238302__Ovine_enzootic_nasal_tumor_virus__69576__D303-392
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00607.26 best | Gag_p24 | 118.0 | 3.60e-34 | 100.0% | 90.6% |
D3
high
residues 492-574
Domain cluster:
rep: p24_CA__NP_955618__Human_T-cell_leukemia_virus_type_I__11908__D133-202
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19317.5 best | Gag_p24_C | 79.6 | 1.50e-22 | 80.7% | 90.5% |