gag

Euk-Vir

Rhesus_macaque_simian_foamy_virus

gag__YP_009513241__Rhesus_macaque_simian_foamy_virus__2170199

Identity

56.8 mean pLDDT

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Retroviridae› Simiispumavirus› Rhesus_macaque_simian_foamy_virus

TaxID: 2170199

View cluster (13 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-144

PDB

Domain cluster: rep: gag_protein__YP_009508555__Japanese_macaque_simian_foamy_virus__2170198__D5-133

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03276.20 best	Gag_spuma_N	197.7	1.10e-58	97.9%	96.5%

D2 medium residues 297-457

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF20672.4 best	Gag_FV_central	260.4	8.80e-78	100.0%	93.1%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1cy5A00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.58	25.0	3.20e-01	83.2%	66.3%
2af7D00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.53	33.0	3.67e-01	91.3%	79.3%