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gag_polyprotein
Euk-VirHuman_immunodeficiency_virus_2
gag_polyprotein__NP_056837__Human_immunodeficiency_virus_2__11709
Identity
- Accession:
- NP_056837 ↗
- Protein ID:
- gag_polyprotein
- Kingdom:
- euk
Quality
69.5
mean pLDDT
Taxonomy
Pararnavirae›
Artverviricota›
Revtraviricetes›
Ortervirales›
Retroviridae›
Lentivirus›
Human_immunodeficiency_virus_2
TaxID: 11709
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-110
Domain cluster:
rep: gag_protein__NP_054369__Simian_immunodeficiency_virus__11723__D11-108
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00540.24 best | Gag_p17 | 152.7 | 9.20e-45 | 99.0% | 67.9% |
D2
high
residues 145-217_231-279
Domain cluster:
rep: gag_protein__YP_009305199__Simian_retrovirus_8__1904439__D302-440
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00607.26 best | Gag_p24 | 40.8 | 2.70e-10 | 95.9% | 97.7% |
D3
high
residues 284-365
Domain cluster:
rep: p24_CA__NP_955618__Human_T-cell_leukemia_virus_type_I__11908__D133-202
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19317.5 best | Gag_p24_C | 108.0 | 2.20e-31 | 82.9% | 91.9% |