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gag_protein
Euk-VirSimian_immunodeficiency_virus_SIV-mnd_2
gag_protein__NP_758886__Simian_immunodeficiency_virus_SIV-mnd_2__159122
Identity
- Accession:
- NP_758886 ↗
- Protein ID:
- gag_protein
- Kingdom:
- euk
Quality
69.3
mean pLDDT
Taxonomy
Pararnavirae›
Artverviricota›
Revtraviricetes›
Ortervirales›
Retroviridae›
Lentivirus›
Simian_immunodeficiency_virus_SIV-mnd_2
TaxID: 159122
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-118
Domain cluster:
rep: gag_protein__NP_054369__Simian_immunodeficiency_virus__11723__D11-108
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00540.24 best | Gag_p17 | 159.7 | 6.20e-47 | 100.0% | 75.0% |
D2
high
residues 138-219_232-280
Domain cluster:
rep: gag_protein__YP_009305199__Simian_retrovirus_8__1904439__D302-440
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00607.26 best | Gag_p24 | 36.0 | 8.20e-09 | 90.1% | 93.8% |
D3
high
residues 285-368
Domain cluster:
rep: p24_CA__NP_955618__Human_T-cell_leukemia_virus_type_I__11908__D133-202
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19317.5 best | Gag_p24_C | 99.2 | 1.20e-28 | 81.0% | 87.8% |