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gag_protein
Euk-VirJapanese_macaque_simian_foamy_virus
gag_protein__YP_009508555__Japanese_macaque_simian_foamy_virus__2170198
Identity
- Accession:
- YP_009508555 ↗
- Protein ID:
- gag_protein
- Kingdom:
- euk
Quality
61.6
mean pLDDT
Taxonomy
Pararnavirae›
Artverviricota›
Revtraviricetes›
Ortervirales›
Retroviridae›
Simiispumavirus›
Japanese_macaque_simian_foamy_virus
TaxID: 2170198
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-133
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03276.20 best | Gag_spuma_N | 184.6 | 1.30e-54 | 97.7% | 88.7% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 29.0 | 3.67e-01 | 70.5% | 100.0% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1019414 | 6122.1.1.1 ↗ | a+b two layers › N-terminal domain of spumavirus gag protein › N-terminal domain of spumavirus gag protein › N-terminal domain of spumavirus gag protein › Gag_spuma_N | 0.98 | 96.0 | 8.42e-01 | 100.0% | 74.6% |
| 4551342 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 30.0 | 3.57e-01 | 73.6% | 76.5% |
D2
medium
residues 297-457
Domain cluster:
rep: gag__YP_009513241__Rhesus_macaque_simian_foamy_virus__2170199__D297-457
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20672.4 best | Gag_FV_central | 259.5 | 1.70e-77 | 100.0% | 93.1% |