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glycoprot
Euk-VirKampung_Karu_virus
glycoprot__YP_009553727__Kampung_Karu_virus__2045186
Identity
- Accession:
- YP_009553727 ↗
- Protein ID:
- glycoprot
- Kingdom:
- euk
Quality
83.8
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Flasuviricetes›
Amarillovirales›
Flaviviridae›
Orthoflavivirus›
Kampung_Karu_virus
TaxID: 2045186
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-49_132-193_278-293
Domain cluster:
rep: uncovered_polypeptide_truncated_polyprotein__YP_006485886_0-792__Murray_Valley_encephalitis_virus__11079__D299-336_439-487_569-589
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00869.26 best | Flavi_glycoprot | 67.2 | 2.00e-18 | 55.6% | 21.3% |
D2
medium
residues 50-61_120-131_195-232_254-276
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6j5cA02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.92 | 78.0 | 7.96e-01 | 88.2% | 100.0% |
| 6epkA02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.91 | 73.0 | 8.03e-01 | 88.2% | 100.0% |
| 3p54A02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.89 | 72.0 | 7.92e-01 | 88.2% | 100.0% |
| 1okeB02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.89 | 76.0 | 7.98e-01 | 88.2% | 100.0% |
| 1yemB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.73 | 49.0 | 3.96e-01 | 70.6% | 83.7% |
| 3iujA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.62 | 51.0 | 3.42e-01 | 89.4% | 27.9% |
| 1e5tA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.62 | 51.0 | 3.36e-01 | 89.4% | 29.2% |
| 7ne4A01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.60 | 49.0 | 3.29e-01 | 89.4% | 27.4% |
| 3d3rA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 32.0 | 3.31e-01 | 97.6% | 54.2% |
| 5z5dA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 42.0 | 3.19e-01 | 72.9% | 61.3% |
| 1w0pA03 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 43.0 | 3.38e-01 | 84.7% | 40.1% |
| 7bysA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 44.0 | 3.04e-01 | 87.1% | 34.1% |
| 2xe4A02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.55 | 43.0 | 2.88e-01 | 85.9% | 26.7% |
| 1k90A02 | 3.90.1760.10 | Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain | 0.54 | 39.0 | 3.17e-01 | 94.1% | 40.3% |
| 2k2jA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 37.0 | 3.36e-01 | 71.8% | 81.2% |
| 3nvnA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 45.0 | 2.95e-01 | 96.5% | 41.5% |
| 2bjoA01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.52 | 26.0 | 3.46e-01 | 77.6% | 97.6% |
| 2r1bA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 36.0 | 2.82e-01 | 71.8% | 71.2% |
| 3fy6A01 | 3.30.2210.10 | Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily | 0.52 | 36.0 | 3.37e-01 | 71.8% | 96.3% |
| 3rlfF03 | 2.40.430.10 | Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP | 0.51 | 45.0 | 4.46e-01 | 100.0% | 100.0% |
| 2yzyA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.50 | 41.0 | 3.42e-01 | 92.9% | 84.0% |
| 5muaB01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.50 | 39.0 | 3.34e-01 | 83.5% | 86.9% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2330240 | 5090.1.1.1 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Flavi_glycoprot | 0.92 | 89.0 | 5.76e-01 | 100.0% | 73.8% |
| 3581143 | 4.1.1.43 ↗ | beta barrels › SH3 › SH3 › SH3 › SMN_Tudor | 0.59 | 36.0 | 4.02e-01 | 70.6% | 80.0% |
| 3597078 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.58 | 40.0 | 3.15e-01 | 72.9% | 58.5% |
| 3251816 | 3257.1.1.1 ↗ | a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N | 0.56 | 49.0 | 3.74e-01 | 96.5% | 91.8% |
| 3520914 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.56 | 38.0 | 2.20e-01 | 70.6% | 10.9% |
| 3803352 | 3257.1.1.1 ↗ | a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N | 0.55 | 48.0 | 3.65e-01 | 96.5% | 93.0% |
| 4940485 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.55 | 44.0 | 3.90e-01 | 87.1% | 75.2% |
| 5012336 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.54 | 48.0 | 3.80e-01 | 98.8% | 50.3% |
| 3260943 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 39.0 | 4.25e-01 | 100.0% | 94.3% |
| 3228995 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.53 | 47.0 | 2.85e-01 | 97.6% | 70.9% |
| 3512368 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.53 | 37.0 | 3.01e-01 | 71.8% | 84.2% |
| 3619501 | 5.1.4.258 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 | 0.52 | 43.0 | 2.97e-01 | 91.8% | 32.1% |
| 3393241 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.52 | 42.0 | 2.96e-01 | 89.4% | 27.0% |
| 4949773 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.52 | 36.0 | 3.07e-01 | 72.9% | 60.7% |
| 3586315 | 719.1.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain | 0.52 | 44.0 | 3.89e-01 | 100.0% | 91.1% |
| 3671396 | 4.1.1.316 ↗ | beta barrels › SH3 › SH3 › SH3 › PUB62-63_C | 0.51 | 35.0 | 3.76e-01 | 71.8% | 83.6% |
| 3575745 | 5.1.4.90 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Itfg2 | 0.51 | 45.0 | 2.97e-01 | 98.8% | 91.0% |
D3
medium
residues 62-119_233-253
Domain cluster:
rep: uncovered_polypeptide_truncated_polyprotein__YP_009259274_0-676__Mercadeo_virus__1708574__D309-361
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00869.26 best | Flavi_glycoprot | 74.1 | 1.70e-20 | 89.9% | 19.3% |