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glycoprotein_350

Euk-Vir

Human_gammaherpesvirus_4

glycoprotein_350__YP_401667__Human_gammaherpesvirus_4__10376

Identity

Accession:
YP_401667 ↗
Protein ID:
glycoprotein_350
Kingdom:
euk

Quality

50.1 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Lymphocryptovirus› human_gammaherpesvirus_4

TaxID: 10376

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-151
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05109.21 best Herpes_gp350_A 270.6 5.80e-81 100.0% 89.4%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2h6oA01 2.60.40.2800 Mainly Beta › Sandwich › Immunoglobulin-like › 0.95 93.0 9.12e-01 100.0% 95.3%
1xakA00 2.60.40.1550 Mainly Beta › Sandwich › Immunoglobulin-like › SARS coronavirus X4 0.77 37.0 5.20e-01 97.9% 95.6%
2pttB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.75 55.0 6.22e-01 100.0% 99.1%
3o4lD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.75 53.0 6.06e-01 97.2% 99.0%
5eo9B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.74 51.0 5.71e-01 100.0% 90.0%
3u83A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 53.0 5.93e-01 97.2% 99.1%
2h6oA03 2.60.40.2820 Mainly Beta › Sandwich › Immunoglobulin-like › 0.72 53.0 5.93e-01 99.3% 98.2%
2petA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 54.0 5.89e-01 100.0% 96.5%
3q0hB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 50.0 5.71e-01 100.0% 96.3%
4jgjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 49.0 5.59e-01 100.0% 98.0%
6on6A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 50.0 5.59e-01 100.0% 96.3%
1epfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 46.0 5.44e-01 100.0% 100.0%
2z4tA01 2.60.40.3010 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 43.0 5.19e-01 100.0% 95.7%
3oq3B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 45.0 4.76e-01 99.3% 74.6%
1dr9A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 48.0 5.44e-01 96.5% 99.0%
1v8hA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 49.0 5.55e-01 99.3% 100.0%
7q61A01 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 49.0 5.47e-01 100.0% 99.1%
3r0nA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 55.0 5.73e-01 99.3% 96.9%
2oxgC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 46.0 5.28e-01 100.0% 100.0%
3up1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 45.0 5.13e-01 100.0% 96.2%
4exkA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 43.0 4.92e-01 100.0% 94.2%
5dzvA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.63 44.0 4.97e-01 100.0% 95.3%
4brvA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.62 48.0 5.15e-01 100.0% 93.5%
1l3wA04 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.61 43.0 4.84e-01 100.0% 96.2%
5i8dA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.61 44.0 4.80e-01 100.0% 92.9%
3q48B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 42.0 4.74e-01 99.3% 95.3%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 35.0 3.68e-01 100.0% 65.4%
4l3aA03 2.60.40.3890 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 43.0 4.81e-01 98.6% 99.1%
4mymA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 26.0 2.56e-01 98.6% 38.4%
3nwnA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.56 51.0 3.93e-01 98.6% 51.0%
1uynX00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.55 46.0 3.77e-01 91.5% 93.5%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 45.0 4.01e-01 90.8% 83.2%
3oc5A02 2.60.40.3240 Mainly Beta › Sandwich › Immunoglobulin-like › Vibrio cholerae toxin co-regulated pilus biosynthesis protein F, C-terminal domain 0.53 45.0 4.51e-01 99.3% 90.8%
1wfmA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 39.0 4.02e-01 99.3% 80.4%
3sybA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.52 41.0 2.96e-01 83.1% 98.8%
2uwaA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.74e-01 100.0% 68.6%
3irpX02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 46.0 4.60e-01 99.3% 95.9%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.51 38.0 3.85e-01 78.2% 92.6%
3kf3A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 45.0 4.25e-01 100.0% 89.3%
6j5xA02 3.90.850.10 Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain 0.51 46.0 3.95e-01 97.2% 80.6%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4866124 11.1.1.73 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_gp350_A 0.96 93.0 8.97e-01 100.0% 91.0%
3850950 11.1.1.143 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Receptor_2B4 0.78 57.0 5.94e-01 100.0% 82.3%
3931861 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.74 49.0 5.75e-01 100.0% 96.0%
3921885 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.72 52.0 5.71e-01 100.0% 92.2%
3935339 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 49.0 5.59e-01 100.0% 97.1%
3940218 3156.1.1.0 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.68 42.0 4.99e-01 100.0% 92.6%
3592727 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 35.0 4.69e-01 100.0% 97.3%
3267141 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 47.0 5.43e-01 97.9% 99.0%
3578912 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 43.0 5.13e-01 97.9% 98.0%
5069766 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 43.0 4.93e-01 98.6% 93.3%
3586787 11.1.1.918 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_FAT4_N 0.62 40.0 4.80e-01 100.0% 97.9%
3893945 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.62 42.0 4.85e-01 100.0% 98.0%
3477704 11.1.1.159 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Xylo_C 0.59 54.0 4.25e-01 100.0% 49.7%
5077592 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 47.0 5.03e-01 98.6% 100.0%
5009370 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.58 41.0 4.23e-01 100.0% 77.8%
1714455 11.26.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Viral chemokine binding protein m3 › Viral chemokine binding protein m3 0.57 50.0 4.04e-01 97.9% 51.6%
4640212 10.1.1.117 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin 0.56 50.0 3.99e-01 99.3% 77.7%
3497224 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 4.65e-01 100.0% 89.6%
5010985 10.1.1.117 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin 0.56 50.0 4.01e-01 99.3% 79.3%
4991389 10.1.1.117 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin 0.56 50.0 4.08e-01 99.3% 79.5%
3824997 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 47.0 3.14e-01 95.8% 22.2%
3995219 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 49.0 4.85e-01 99.3% 92.0%
3597539 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 50.0 3.75e-01 98.6% 44.5%
1579684 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.55 36.0 3.44e-01 98.6% 57.1%
4621403 11.1.1.285 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › RibLong 0.55 43.0 4.61e-01 100.0% 97.5%
4944752 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 41.0 4.43e-01 100.0% 95.8%
4937593 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.54 42.0 3.70e-01 83.1% 90.4%
4944012 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 35.0 3.99e-01 78.2% 86.4%
3810286 10.32.1.192 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.53 46.0 4.15e-01 99.3% 68.2%
3715750 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.53 48.0 3.34e-01 98.6% 30.5%
4955022 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 4.47e-01 100.0% 93.8%
3802129 10.32.1.192 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.53 46.0 3.54e-01 96.5% 40.6%
4859849 11.1.1.60 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Vps26 0.52 38.0 4.22e-01 87.3% 98.2%
3848806 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 40.0 4.22e-01 90.8% 93.5%
4564179 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.52 46.0 4.21e-01 99.3% 86.2%
3776151 11.1.5.94 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 0.52 46.0 4.46e-01 100.0% 92.1%
3384165 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.51 38.0 4.03e-01 78.9% 93.6%
3392961 10.2.1.31 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin 0.51 36.0 3.87e-01 98.6% 85.0%
3485490 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.50 43.0 3.61e-01 100.0% 54.1%
5026074 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 34.0 3.63e-01 83.8% 80.0%
D2 high residues 166-305
PDB
D3 high residues 312-423
PDB