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glycoprotein_B

Euk-Vir

Macropodid_alphaherpesvirus_1

glycoprotein_B__YP_009227260__Macropodid_alphaherpesvirus_1__137443

Identity

Accession:
YP_009227260 ↗
Protein ID:
glycoprotein_B
Kingdom:
euk

Quality

71.2 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Macropodid_alphaherpesvirus_1

TaxID: 137443

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 120-133_341-449
PDB
Domain cluster: rep: BALF4__YP_010084703__Lymphocryptovirus_Macaca_pfe-lcl-E3__1716044__D77-88_295-391
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17417.9 best Glycoprot_B_PH2 114.1 4.20e-33 79.7% 100.0%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.99 90.0 9.09e-01 92.7% 94.2%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.92 79.0 8.36e-01 91.1% 98.2%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.92 78.0 8.25e-01 89.4% 97.3%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 44.0 4.68e-01 87.8% 76.9%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.65 31.0 3.56e-01 90.2% 60.7%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 37.0 4.34e-01 87.8% 79.5%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 39.0 4.14e-01 87.8% 68.8%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 26.0 3.18e-01 89.4% 59.5%
2e7vA01 3.30.70.960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain 0.58 36.0 3.90e-01 90.2% 72.4%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 28.0 3.96e-01 87.8% 100.0%
3gk6A00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.53 38.0 3.60e-01 75.6% 100.0%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.53 38.0 3.80e-01 76.4% 90.2%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.80e-01 84.6% 72.4%
3nlcA01 3.30.70.2700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 28.0 3.30e-01 91.1% 78.9%
4atnA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 35.0 3.12e-01 89.4% 47.3%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 4.14e-01 87.8% 87.0%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 30.0 3.45e-01 72.4% 80.0%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 26.0 3.29e-01 87.0% 87.9%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.50 33.0 3.60e-01 87.8% 81.0%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 40.0 3.76e-01 87.8% 69.1%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3932886 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.72 37.0 4.23e-01 90.2% 65.3%
3227023 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 46.0 4.02e-01 87.8% 46.5%
3742330 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.64 41.0 4.26e-01 94.3% 69.6%
5032759 9.23.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.63 32.0 3.81e-01 85.4% 70.2%
3515688 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 46.0 4.72e-01 87.8% 82.5%
3785371 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.60 43.0 4.20e-01 91.9% 67.4%
3260733 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.58 41.0 4.28e-01 88.6% 80.0%
4056117 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.56 25.0 3.25e-01 94.3% 75.4%
3166727 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 44.0 4.17e-01 91.9% 72.4%
3273247 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 37.0 3.53e-01 71.5% 90.0%
3487437 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.53 43.0 4.14e-01 88.6% 77.9%
2545212 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.52 36.0 3.21e-01 71.5% 83.0%
3769234 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 26.0 3.24e-01 80.5% 83.1%
D2 medium residues 134-252
PDB
Domain cluster: rep: envelope_glycoprotein_B__YP_009344884__Murine_roseolovirus__1940555__D81-138_150-207
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17416.9 best Glycoprot_B_PH1 112.1 4.10e-32 100.0% 56.2%
D3 medium residues 253-340
PDB
Domain cluster: rep: Glycoprotein_B__YP_214067__Murid_betaherpesvirus_1__10366__D277-316_330-353
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17416.9 best Glycoprot_B_PH1 100.6 1.40e-28 100.0% 40.9%
D4 medium residues 547-649
PDB
Domain cluster: rep: envelope_glycoprotein_B__YP_009342376__Spheniscid_alphaherpesvirus_1__2560777__D566-653
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00606.24 best Glycoprotein_B 126.9 1.20e-36 100.0% 46.4%