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glycoprotein_H
Euk-VirHuman_betaherpesvirus_6A
glycoprotein_H__NP_042941__Human_betaherpesvirus_6A__32603
Identity
- Accession:
- NP_042941 ↗
- Protein ID:
- glycoprotein_H
- Kingdom:
- euk
Quality
81.2
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Roseolovirus›
Human_betaherpesvirus_6A
TaxID: 32603
Cluster
View cluster (43 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 142-236_341-359
Domain cluster:
rep: orf22__YP_009044405__Alcelaphine_gammaherpesvirus_2__138184__D149-254
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02489.22 best | Herpes_glycop_H | 70.8 | 1.30e-19 | 99.1% | 25.6% |
D2
medium
residues 237-340
Domain cluster:
rep: envelope_glycoprotein_H__YP_009253953__Macaca_nemestrina_herpesvirus_7__1846169__D249-354
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02489.22 best | Herpes_glycop_H | 77.6 | 1.20e-21 | 99.0% | 21.4% |
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4wzxA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.74 | 49.0 | 5.63e-01 | 76.9% | 93.3% |
| 4hwhE00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.74 | 53.0 | 5.69e-01 | 74.0% | 88.6% |
| 1t72A01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.74 | 53.0 | 5.07e-01 | 74.0% | 76.9% |
| 4hwdD00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.73 | 54.0 | 5.73e-01 | 76.0% | 88.9% |
| 1t98A02 | 1.20.58.590 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain | 0.72 | 57.0 | 4.92e-01 | 84.6% | 97.5% |
| 1sj7C00 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.72 | 53.0 | 4.52e-01 | 76.9% | 55.4% |
| 5nl6B01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 52.0 | 4.96e-01 | 75.0% | 85.1% |
| 1yz5B00 | 1.20.190.20 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain | 0.72 | 58.0 | 4.47e-01 | 86.5% | 53.7% |
| 3fhnA01 | 6.10.280.210 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain A | 0.71 | 51.0 | 4.17e-01 | 75.0% | 42.9% |
| 1f7uA02 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.70 | 52.0 | 4.87e-01 | 76.9% | 67.2% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.70 | 48.0 | 5.44e-01 | 76.0% | 96.0% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.70 | 46.0 | 4.75e-01 | 74.0% | 71.1% |
| 2pfdA03 | 1.20.120.680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle | 0.70 | 59.0 | 4.71e-01 | 91.3% | 83.3% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.70 | 48.0 | 5.14e-01 | 76.0% | 83.1% |
| 2d2sA01 | 1.20.58.1210 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain | 0.69 | 53.0 | 5.11e-01 | 79.8% | 73.3% |
| 1qlbA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.68 | 49.0 | 4.76e-01 | 76.0% | 68.6% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.68 | 46.0 | 4.99e-01 | 73.1% | 83.9% |
| 3kkbA00 | 1.20.120.880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain | 0.68 | 47.0 | 4.43e-01 | 76.0% | 58.7% |
| 2o36A01 | 1.20.1050.40 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Endopeptidase. Chain P; domain 1 | 0.68 | 50.0 | 4.68e-01 | 76.9% | 86.7% |
| 3mx3A01 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.68 | 53.0 | 4.26e-01 | 82.7% | 63.6% |
| 3cqcB01 | 1.20.58.1380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 48.0 | 5.08e-01 | 81.7% | 84.4% |
| 1w99A01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.67 | 57.0 | 4.88e-01 | 94.2% | 89.0% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.67 | 49.0 | 4.67e-01 | 76.9% | 65.3% |
| 1j0mA01 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.67 | 55.0 | 3.78e-01 | 88.5% | 28.8% |
| 3d85C00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.67 | 48.0 | 4.39e-01 | 74.0% | 80.5% |
| 3fseB02 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.67 | 48.0 | 4.31e-01 | 75.0% | 88.9% |
| 3vkgB03 | 1.20.58.1120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 | 0.66 | 51.0 | 4.48e-01 | 82.7% | 64.1% |
| 3purA03 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 52.0 | 5.11e-01 | 84.6% | 96.4% |
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.65 | 39.0 | 3.94e-01 | 95.2% | 59.0% |
| 2c0gA02 | 1.20.1150.12 | Mainly Alpha › Up-down Bundle › Endoplasmic reticulum protein erp29 › Endoplasmic reticulum resident protein 29, C-terminal domain | 0.64 | 43.0 | 4.28e-01 | 74.0% | 66.0% |
| 4p9tA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.64 | 45.0 | 4.34e-01 | 76.0% | 63.3% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 38.0 | 4.36e-01 | 92.3% | 86.1% |
| 2ib0A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.62 | 44.0 | 4.13e-01 | 75.0% | 91.1% |
| 2rkkA01 | 1.25.40.270 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 | 0.62 | 51.0 | 4.53e-01 | 92.3% | 89.7% |
| 3rc3A05 | 1.20.58.1080 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 48.0 | 4.71e-01 | 91.3% | 77.9% |
| 7t7kA01 | 1.20.930.60 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.60 | 34.0 | 3.35e-01 | 91.3% | 48.3% |
| 3axjB01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.56 | 47.0 | 4.17e-01 | 95.2% | 82.6% |
| 4a4kA01 | 1.20.1500.20 | Mainly Alpha › Up-down Bundle › YheA-like fold › | 0.54 | 37.0 | 3.66e-01 | 100.0% | 65.5% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 45.0 | 4.05e-01 | 95.2% | 69.1% |
| 3rkoG00 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 34.0 | 3.50e-01 | 76.0% | 71.0% |
| 1gcvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 41.0 | 3.79e-01 | 90.4% | 70.7% |
| 4c0nA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 41.0 | 3.68e-01 | 91.3% | 62.0% |
| 2cwyA00 | 1.10.3450.10 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like | 0.50 | 39.0 | 4.08e-01 | 81.7% | 97.8% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3817615 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.80 | 60.0 | 6.01e-01 | 76.9% | 87.6% |
| 4175971 | 604.3.1.43 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › FliX | 0.78 | 50.0 | 5.40e-01 | 73.1% | 75.6% |
| 3621359 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.77 | 55.0 | 6.05e-01 | 81.7% | 91.8% |
| 3940580 | 604.6.1.14 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › RasGAP_C | 0.76 | 55.0 | 5.35e-01 | 75.0% | 78.3% |
| 3252144 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.76 | 49.0 | 5.80e-01 | 76.0% | 97.1% |
| 3309012 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.76 | 55.0 | 5.30e-01 | 75.0% | 72.2% |
| 5024001 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.75 | 63.0 | 6.40e-01 | 89.4% | 98.0% |
| 3474661 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.75 | 53.0 | 5.19e-01 | 74.0% | 79.1% |
| 3837777 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.74 | 56.0 | 5.60e-01 | 77.9% | 88.6% |
| 3228341 | 604.1.1.55 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › RasGAP_C | 0.74 | 54.0 | 5.22e-01 | 75.0% | 75.7% |
| 1877520 | 604.1.1.7 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_plectin_7 | 0.74 | 54.0 | 5.22e-01 | 76.0% | 83.9% |
| 5072449 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.74 | 50.0 | 5.40e-01 | 76.9% | 81.1% |
| 3212257 | 601.33.1.10 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › DUF19 | 0.73 | 50.0 | 4.99e-01 | 76.9% | 68.6% |
| 3243589 | 109.4.1.590 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NopRA1 | 0.73 | 63.0 | 4.03e-01 | 92.3% | 24.5% |
| 4036392 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.73 | 50.0 | 4.90e-01 | 73.1% | 65.5% |
| 4182059 | 621.1.1.3 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB | 0.72 | 53.0 | 5.18e-01 | 75.0% | 76.4% |
| 3263292 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.72 | 49.0 | 4.73e-01 | 85.6% | 60.8% |
| 4027056 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.72 | 60.0 | 5.43e-01 | 90.4% | 96.4% |
| 3855165 | 604.6.1.65 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT, GGA_N-GAT | 0.72 | 52.0 | 4.86e-01 | 76.0% | 68.5% |
| 3218730 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.71 | 48.0 | 5.49e-01 | 75.0% | 96.0% |
| 3829016 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.71 | 52.0 | 4.92e-01 | 76.9% | 67.2% |
| 5020412 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.71 | 50.0 | 5.05e-01 | 74.0% | 74.3% |
| 4026662 | 4207.1.2.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region | 0.70 | 58.0 | 5.29e-01 | 89.4% | 95.7% |
| 3371182 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.70 | 51.0 | 5.08e-01 | 75.0% | 76.2% |
| 2060764 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.70 | 60.0 | 5.63e-01 | 94.2% | 92.2% |
| 3430042 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 58.0 | 4.21e-01 | 92.3% | 45.2% |
| 4004067 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.69 | 48.0 | 5.26e-01 | 76.9% | 89.4% |
| 3747704 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.68 | 56.0 | 5.13e-01 | 88.5% | 78.5% |
| 3754034 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.66 | 45.0 | 4.90e-01 | 72.1% | 85.9% |
| 3717454 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 55.0 | 3.71e-01 | 91.3% | 33.2% |
| 3929825 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.66 | 49.0 | 4.74e-01 | 79.8% | 71.7% |
| 3601088 | 109.4.1.643 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG2_C | 0.65 | 58.0 | 3.65e-01 | 100.0% | 28.0% |
| 3699725 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 54.0 | 4.73e-01 | 91.3% | 72.3% |
| 3613133 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.64 | 45.0 | 4.91e-01 | 76.9% | 90.6% |
| 5019616 | 5069.1.1.4 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ferric_reduct | 0.61 | 48.0 | 4.08e-01 | 85.6% | 66.1% |
| 4944333 | 633.10.1.0 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like | 0.59 | 44.0 | 4.14e-01 | 77.9% | 79.2% |
| 3254330 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 48.0 | 4.25e-01 | 91.3% | 72.5% |
| 4982026 | 150.1.1.209 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF7121 | 0.56 | 39.0 | 3.57e-01 | 76.0% | 53.6% |
| 3180975 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.54 | 37.0 | 3.12e-01 | 72.1% | 80.5% |
D3
medium
residues 360-516
Domain cluster:
rep: BXLF2__YP_001129496__Human_herpesvirus_4_type_2__12509__D346-529
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02489.22 best | Herpes_glycop_H | 165.0 | 3.70e-48 | 98.7% | 33.1% |
D4
medium
residues 517-597
Domain cluster:
rep: envelope_glycoprotein_H__YP_009179315__Elephant_endotheliotropic_herpesvirus_4__548914__D571-650
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17488.8 best | Herpes_glycoH_C | 64.6 | 1.20e-17 | 95.1% | 53.2% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m1cA04 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.78 | 56.0 | 4.72e-01 | 84.0% | 46.2% |
| 7b7nH01 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.73 | 56.0 | 4.80e-01 | 84.0% | 52.0% |
| 2xqyA03 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.71 | 57.0 | 4.79e-01 | 97.5% | 52.6% |
| 3w1zC00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 44.0 | 3.68e-01 | 71.6% | 90.8% |
| 1shsA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 43.0 | 3.81e-01 | 71.6% | 91.3% |
| 4kh9A01 | 2.60.40.3870 | Mainly Beta › Sandwich › Immunoglobulin-like › Uncharacterised protein PF16024, DUF4785 | 0.62 | 42.0 | 3.63e-01 | 70.4% | 84.8% |
| 4h5bA00 | 3.30.1460.70 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.60 | 44.0 | 3.62e-01 | 79.0% | 80.9% |
| 1opoA02 | 2.60.40.1780 | Mainly Beta › Sandwich › Immunoglobulin-like › Carmovirus coat protein | 0.59 | 42.0 | 3.90e-01 | 74.1% | 94.2% |
| 1k3sA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.58 | 44.0 | 4.00e-01 | 80.2% | 91.7% |
| 2bgoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 38.0 | 3.43e-01 | 71.6% | 94.0% |
| 5axgA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 37.0 | 3.29e-01 | 70.4% | 97.6% |
| 1zldA00 | 2.60.40.1920 | Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA | 0.53 | 39.0 | 3.72e-01 | 80.2% | 92.2% |
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.53 | 29.0 | 3.31e-01 | 70.4% | 71.7% |
| 1hn0A04 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.52 | 36.0 | 3.24e-01 | 72.8% | 82.0% |
| 3d33A00 | 2.60.40.3080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 37.0 | 3.62e-01 | 77.8% | 85.1% |
| 3amkA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 35.0 | 3.31e-01 | 70.4% | 100.0% |
| 1ok0A00 | 2.60.40.20 | Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-amylase inhibitor | 0.51 | 38.0 | 3.94e-01 | 79.0% | 100.0% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2095502 | 3145.1.1.1 ↗ | beta sandwiches › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › Herpes_glycoH_C | 0.90 | 82.0 | 6.54e-01 | 96.3% | 53.1% |
| 1936537 | 3145.1.1.1 ↗ | beta sandwiches › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › Herpes_glycoH_C | 0.74 | 68.0 | 5.49e-01 | 100.0% | 56.4% |
| 119479 | 3145.1.1.1 ↗ | beta sandwiches › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › Herpes_glycoH_C | 0.68 | 59.0 | 4.80e-01 | 95.1% | 51.7% |
| 5073134 | 241.11.1.5 ↗ | a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › DUF5655 | 0.66 | 49.0 | 4.39e-01 | 79.0% | 87.0% |
| 3337623 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.60 | 41.0 | 3.73e-01 | 70.4% | 99.0% |
| 5052820 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.59 | 40.0 | 3.03e-01 | 70.4% | 60.5% |
| 4026403 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.59 | 40.0 | 3.36e-01 | 71.6% | 86.4% |
| 4241488 | 237.1.1.5 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › RolB_RolC | 0.58 | 42.0 | 3.40e-01 | 76.5% | 94.8% |
| None | — | 0.57 | 39.0 | 2.49e-01 | 70.4% | 33.1% | |
| 2641000 | 12.1.1.6 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_42C | 0.57 | 37.0 | 4.39e-01 | 70.4% | 100.0% |
| 4677520 | 701.1.1.1 ↗ | beta sandwiches › alpha-Amylase inhibitor tendamistat › alpha-Amylase inhibitor tendamistat › alpha-Amylase inhibitor tendamistat › A_amylase_inhib | 0.54 | 38.0 | 3.92e-01 | 72.8% | 96.0% |
| 4024855 | 10.13.1.0 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A | 0.53 | 38.0 | 3.22e-01 | 75.3% | 92.6% |
| 3186200 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 35.0 | 3.51e-01 | 70.4% | 88.2% |
| 4996514 | 3504.2.1.1 ↗ | beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco | 0.51 | 39.0 | 3.30e-01 | 81.5% | 91.1% |
| 3909461 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 35.0 | 3.41e-01 | 70.4% | 86.7% |
| 3822410 | 319.1.1.18 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF31004 | 0.51 | 35.0 | 3.03e-01 | 71.6% | 94.5% |
| 3246415 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.50 | 40.0 | 3.46e-01 | 85.2% | 71.2% |
| 3229357 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.50 | 34.0 | 2.80e-01 | 72.8% | 86.9% |