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glycoprotein_L

Euk-Vir

Rhinolophus_gammaherpesvirus_1

glycoprotein_L__YP_009551856__Rhinolophus_gammaherpesvirus_1__2054179

Identity

Accession:
YP_009551856 ↗
Protein ID:
glycoprotein_L
Kingdom:
euk

Quality

70.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Percavirus› Rhinolophus_gammaherpesvirus_1

TaxID: 2054179

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 29-87
PDB
Domain cluster: rep: ORF47__YP_009042024__Bovine_gammaherpesvirus_6__1504288__D25-78
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11108.14 best Phage_glycop_gL 62.9 3.50e-17 100.0% 57.8%
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.84 67.0 5.50e-01 100.0% 50.5%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.75 57.0 5.25e-01 86.4% 64.9%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 58.0 5.22e-01 89.8% 85.5%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 52.0 5.33e-01 91.5% 81.0%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.69 53.0 3.44e-01 83.1% 32.7%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 50.0 4.94e-01 83.1% 73.0%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 49.0 4.82e-01 76.3% 79.4%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 57.0 5.62e-01 100.0% 87.5%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 46.0 4.48e-01 84.7% 64.6%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 53.0 4.92e-01 100.0% 68.8%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 4.63e-01 83.1% 68.2%
7arcC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.65 54.0 4.26e-01 96.6% 63.7%
1sezA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 53.0 3.82e-01 93.2% 80.6%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 50.0 4.72e-01 83.1% 85.5%
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 49.0 4.05e-01 84.7% 85.6%
1hxmB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 45.0 3.60e-01 76.3% 93.6%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.64 50.0 4.19e-01 86.4% 55.3%
7z0sE01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.63 51.0 4.22e-01 94.9% 84.0%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.63 48.0 4.96e-01 88.1% 89.3%
3cebA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.63 45.0 4.01e-01 76.3% 100.0%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.63 44.0 4.03e-01 74.6% 68.4%
2w59A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 42.0 3.62e-01 71.2% 98.0%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 52.0 4.25e-01 96.6% 79.5%
2ar5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 45.0 3.62e-01 78.0% 69.2%
1ha6A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 48.0 4.59e-01 98.3% 74.3%
4ba8A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 42.0 3.62e-01 72.9% 96.1%
1yguA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.62 49.0 3.18e-01 88.1% 33.3%
1sr9A02 3.30.160.270 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain 0.62 53.0 3.92e-01 100.0% 84.8%
4r6uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 53.0 4.62e-01 94.9% 89.8%
3f1zI00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 48.0 3.95e-01 91.5% 45.7%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 48.0 3.93e-01 88.1% 45.6%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 47.0 4.10e-01 88.1% 61.5%
5eqxA04 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.59 46.0 3.93e-01 89.8% 95.2%
2e9wA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 40.0 3.42e-01 72.9% 93.1%
5jtwA03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 44.0 3.49e-01 83.1% 92.1%
5uv6A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 41.0 3.64e-01 76.3% 97.8%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.58 44.0 3.50e-01 88.1% 40.4%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 44.0 3.52e-01 86.4% 41.4%
3qcmA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 44.0 2.93e-01 88.1% 32.9%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 43.0 4.15e-01 83.1% 80.9%
3po3S02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 37.0 3.54e-01 76.3% 54.1%
4frwA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 3.49e-01 76.3% 94.8%
4mb4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.82e-01 83.1% 87.3%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 42.0 4.04e-01 86.4% 77.5%
8bxrA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.26e-01 72.9% 93.7%
4c2dA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 42.0 3.69e-01 86.4% 67.7%
2ekjA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.44e-01 84.7% 80.0%
6bu2A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 43.0 3.23e-01 88.1% 34.7%
5fdyA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 36.0 2.99e-01 72.9% 93.5%
3ednA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.53 39.0 3.04e-01 86.4% 52.4%
1qftB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 47.0 3.40e-01 100.0% 50.9%
7jrmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.92e-01 89.8% 91.9%
3o4oC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.52e-01 91.5% 94.9%
2rikA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 3.17e-01 76.3% 92.6%
1twfB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.50 40.0 2.89e-01 89.8% 30.5%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2665702 3146.1.1.3 ↗ a+b complex topology › gH main domain › gH main domain › gH main domain › Phage_glycop_gL 0.86 75.0 5.99e-01 100.0% 49.6%
1936538 3146.1.1.3 ↗ a+b complex topology › gH main domain › gH main domain › gH main domain › Phage_glycop_gL 0.84 67.0 5.50e-01 100.0% 50.5%
2095479 1170.1.2.3 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Phage_glycop_gL 0.83 75.0 6.08e-01 100.0% 56.5%
4345080 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.81 57.0 5.55e-01 83.1% 67.7%
3904562 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.72 64.0 5.76e-01 100.0% 85.0%
3603992 330.10.1.1 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.71 51.0 4.36e-01 76.3% 55.8%
4967706 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.69 58.0 4.45e-01 93.2% 81.3%
3517035 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 49.0 4.19e-01 76.3% 78.9%
3903067 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 58.0 4.58e-01 96.6% 72.0%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 50.0 4.93e-01 83.1% 72.3%
3911245 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 56.0 4.65e-01 94.9% 73.6%
4083689 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.67 50.0 4.07e-01 79.7% 90.8%
5030959 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.66 54.0 4.95e-01 91.5% 73.8%
4957572 283.2.1.9 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Sheath_initiator 0.66 52.0 4.04e-01 88.1% 93.3%
3979092 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.66 49.0 3.92e-01 79.7% 84.3%
4946199 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.65 51.0 4.72e-01 84.7% 68.0%
3594465 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 44.0 4.56e-01 71.2% 96.4%
4012857 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 54.0 5.12e-01 91.5% 78.6%
3479736 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 55.0 4.49e-01 94.9% 78.0%
5020770 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.65 54.0 4.20e-01 96.6% 62.1%
4616192 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.64 44.0 3.61e-01 72.9% 85.2%
3941239 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.64 51.0 2.98e-01 86.4% 11.0%
4470732 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.64 43.0 3.70e-01 71.2% 97.0%
3685219 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 54.0 4.08e-01 94.9% 66.2%
4935879 330.10.1.1 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.64 46.0 4.00e-01 76.3% 56.7%
4030981 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 53.0 4.80e-01 93.2% 76.2%
4664970 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 45.0 5.10e-01 74.6% 97.8%
4680459 375.1.1.67 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › NrdR-like_N 0.63 45.0 5.08e-01 74.6% 97.8%
4608418 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.63 49.0 4.37e-01 86.4% 70.6%
3565552 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 52.0 4.14e-01 94.9% 72.8%
5028870 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.63 47.0 4.52e-01 83.1% 85.7%
3825504 330.1.1.5 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.62 44.0 3.89e-01 76.3% 65.6%
3591102 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.62 42.0 3.19e-01 71.2% 66.0%
3598139 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 51.0 3.90e-01 94.9% 56.0%
3251342 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.62 46.0 3.70e-01 81.4% 70.0%
3189324 375.1.1.319 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Saf4_Yju2 0.61 47.0 4.45e-01 83.1% 84.3%
5034195 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.61 41.0 4.19e-01 71.2% 74.5%
3375457 4.1.1.159 ↗ beta barrels › SH3 › SH3 › SH3 › Saf4_Yju2 0.61 46.0 4.32e-01 83.1% 78.7%
4040354 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 47.0 4.37e-01 84.7% 73.3%
5018514 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 43.0 3.27e-01 74.6% 88.1%
3895929 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.61 41.0 3.52e-01 71.2% 90.0%
4080057 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 47.0 4.17e-01 84.7% 64.7%
3591041 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.60 48.0 4.72e-01 89.8% 81.5%
3801624 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 46.0 3.95e-01 86.4% 58.0%
4041551 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.60 49.0 4.04e-01 98.3% 80.8%
5047667 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 49.0 4.27e-01 98.3% 78.0%
3937109 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.59 45.0 2.90e-01 86.4% 30.0%
3288884 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 45.0 3.79e-01 84.7% 55.2%
4039230 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.59 45.0 4.25e-01 86.4% 72.0%
3956055 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.58 48.0 4.10e-01 100.0% 85.5%
4316603 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.58 48.0 4.55e-01 96.6% 81.3%
3614398 319.1.1.8 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CactinC_cactus 0.58 46.0 3.69e-01 89.8% 64.8%
3537321 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.58 41.0 3.48e-01 76.3% 92.0%
4040973 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.57 41.0 3.96e-01 78.0% 71.4%
3627576 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 44.0 4.34e-01 88.1% 80.0%
3483370 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.57 44.0 4.08e-01 88.1% 96.2%
3589295 3414.1.1.1 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › Big_3 0.57 45.0 4.24e-01 89.8% 94.7%
3797649 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 42.0 3.52e-01 83.1% 56.4%
3519380 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.55 42.0 3.92e-01 89.8% 70.0%
3504714 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.55 39.0 3.39e-01 76.3% 96.8%
3498613 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 42.0 3.51e-01 86.4% 89.1%
3209160 10.13.1.1 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.54 43.0 3.14e-01 93.2% 37.8%
4170981 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.54 38.0 3.24e-01 76.3% 89.5%
3875198 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.53 37.0 3.20e-01 78.0% 85.5%
4997648 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.53 36.0 3.86e-01 72.9% 88.0%
4023252 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 42.0 3.38e-01 94.9% 83.8%
4951562 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.60e-01 93.2% 98.0%
5045263 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.51 40.0 3.71e-01 89.8% 92.5%
3883912 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.46e-01 84.7% 95.6%
3794644 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.51 38.0 3.03e-01 83.1% 74.1%
3243872 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 41.0 2.76e-01 98.3% 31.1%
3494256 2003.1.1.51 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.50 44.0 2.82e-01 100.0% 24.3%
D2 medium residues 88-145
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cqcB01 1.20.58.1380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 47.0 4.08e-01 74.1% 61.1%
3i2fA02 1.10.3020.10 Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) 0.55 46.0 4.00e-01 98.3% 71.6%
4fzwA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.53 36.0 3.69e-01 74.1% 93.1%
1oq4A00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.53 43.0 2.78e-01 98.3% 39.3%
4fxdA06 1.10.132.60 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain 0.53 47.0 3.42e-01 100.0% 75.6%
4qclA05 1.10.132.60 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain 0.50 43.0 3.18e-01 100.0% 74.4%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3390542 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 55.0 4.68e-01 74.1% 46.3%
3934503 614.1.1.1 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › L27 0.73 50.0 5.31e-01 75.9% 82.0%
3716902 2002.1.1.192 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AMP_deaminase 0.67 59.0 3.35e-01 100.0% 65.2%
3789705 614.1.1.0 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain 0.65 45.0 4.49e-01 72.4% 70.0%
3666909 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.65 58.0 4.08e-01 96.6% 86.1%
3679700 601.33.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.57 46.0 3.68e-01 89.7% 56.5%
3728168 109.4.1.681 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.56 45.0 2.89e-01 100.0% 85.0%
3371049 614.1.1.0 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain 0.55 39.0 3.39e-01 79.3% 44.0%