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glycoprotein_L

Euk-Vir

Phascolarctid_gammaherpesvirus_1

glycoprotein_L__YP_010087488__Phascolarctid_gammaherpesvirus_1__2249313

Identity

Accession:
YP_010087488 ↗
Protein ID:
glycoprotein_L
Kingdom:
euk

Quality

56.5 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Manticavirus› Phascolarctid_gammaherpesvirus_1

TaxID: 2249313

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 61-167_209-219
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11108.14 best Phage_glycop_gL 60.3 2.30e-16 88.1% 92.2%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.83 65.0 7.15e-01 88.1% 97.0%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.70 35.0 4.68e-01 74.6% 89.2%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 29.0 3.62e-01 89.0% 76.1%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 32.0 4.00e-01 95.8% 90.1%
4f98A00 2.30.140.50 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Protein of unknown function DUF2790 0.57 30.0 4.02e-01 77.1% 98.4%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 39.0 4.12e-01 100.0% 80.8%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 42.0 3.83e-01 79.7% 83.3%
2y4tA02 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.55 26.0 3.40e-01 80.5% 92.3%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 42.0 4.30e-01 85.6% 86.4%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 43.0 4.16e-01 85.6% 83.8%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 42.0 4.15e-01 100.0% 78.5%
7ldgA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.52 41.0 3.39e-01 86.4% 46.4%
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.52 31.0 3.20e-01 71.2% 63.0%
1d8cA03 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.50 37.0 3.58e-01 76.3% 92.6%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.50 35.0 3.24e-01 93.2% 56.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2665702 3146.1.1.3 ↗ a+b complex topology › gH main domain › gH main domain › gH main domain › Phage_glycop_gL 0.85 73.0 7.40e-01 90.7% 92.2%
1936538 3146.1.1.3 ↗ a+b complex topology › gH main domain › gH main domain › gH main domain › Phage_glycop_gL 0.83 65.0 7.15e-01 88.1% 97.0%
2095479 1170.1.2.3 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Phage_glycop_gL 0.81 70.0 7.37e-01 90.7% 99.1%
3183024 3755.3.1.46 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › She9_MDM33 0.73 36.0 3.40e-01 82.2% 40.7%
4541080 3755.1.1.11 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › She9_MDM33 0.67 36.0 3.37e-01 85.6% 44.3%
3210948 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.66 32.0 3.85e-01 79.7% 67.5%
5068840 632.25.1.8 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor N-terminal domain › GBS CAMP factor N-terminal domain › NADH_4Fe-4S 0.62 35.0 3.70e-01 94.1% 60.9%
3504301 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.59 40.0 4.20e-01 70.3% 89.1%
3448385 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.59 44.0 4.48e-01 83.9% 80.0%
3530542 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.56 41.0 3.00e-01 76.3% 68.5%
3406826 192.10.1.0 ↗ alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain 0.55 38.0 4.16e-01 74.6% 84.0%
None — 0.55 39.0 2.81e-01 73.7% 75.3%
3501234 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 39.0 2.73e-01 72.9% 91.2%
1082803 227.1.1.13 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc 0.54 34.0 3.19e-01 92.4% 49.0%
3839989 7022.1.1.1 ↗ alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT 0.53 36.0 3.16e-01 70.3% 56.6%
3374439 109.4.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm 0.53 43.0 3.14e-01 87.3% 32.9%
3678902 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 41.0 3.35e-01 83.9% 60.0%
3302660 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.52 32.0 2.66e-01 75.4% 33.2%
4602904 6091.1.1.0 ↗ alpha bundles › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase 0.51 32.0 3.69e-01 70.3% 87.1%