←Back to structures
glycoprotein_M
Euk-VirRhinolophus_gammaherpesvirus_1
glycoprotein_M__YP_009551849__Rhinolophus_gammaherpesvirus_1__2054179
Identity
- Accession:
- YP_009551849 ↗
- Protein ID:
- glycoprotein_M
- Kingdom:
- euk
Quality
81.0
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Percavirus›
Rhinolophus_gammaherpesvirus_1
TaxID: 2054179
Cluster
View cluster (76 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-329
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01528.23 best | Herpes_glycop | 380.0 | 1.40e-113 | 99.4% | 95.8% |
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ay5A02 | 1.20.1410.10 | Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain | 0.75 | 39.0 | 5.36e-01 | 74.5% | 97.6% |
| 2jswA00 | 1.20.1410.10 | Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain | 0.73 | 43.0 | 5.47e-01 | 72.6% | 97.4% |
| 4i1aA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.65 | 33.0 | 3.60e-01 | 91.7% | 56.2% |
| 5tqbB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.63 | 37.0 | 3.68e-01 | 91.1% | 53.6% |
| 1xwmA00 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.63 | 38.0 | 4.56e-01 | 73.2% | 87.3% |
| 2pfdA03 | 1.20.120.680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle | 0.63 | 38.0 | 4.74e-01 | 77.5% | 94.1% |
| 3rauA00 | 1.25.40.280 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains | 0.63 | 42.0 | 4.08e-01 | 92.0% | 59.5% |
| 3u4tB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 30.0 | 3.36e-01 | 92.9% | 58.0% |
| 3gs3A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.60 | 38.0 | 4.32e-01 | 96.9% | 80.7% |
| 7cc7A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 32.0 | 3.90e-01 | 92.6% | 76.0% |
| 3r9mA00 | 1.25.40.280 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains | 0.57 | 41.0 | 3.93e-01 | 94.5% | 62.2% |
| 1tjoB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 30.0 | 4.01e-01 | 72.6% | 92.6% |
| 1zu2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 29.0 | 4.03e-01 | 84.9% | 98.7% |
| 2c9kA01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.57 | 38.0 | 4.43e-01 | 74.2% | 92.1% |
| 2nrjA01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.55 | 41.0 | 4.09e-01 | 74.8% | 91.2% |
| 2j1oA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.55 | 33.0 | 3.70e-01 | 81.8% | 73.7% |
| 2iakA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 31.0 | 3.95e-01 | 89.5% | 93.2% |
| 2dg8D00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 26.0 | 3.46e-01 | 91.4% | 85.0% |
| 2y44A00 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.53 | 31.0 | 3.94e-01 | 71.1% | 98.9% |
| 3ok8A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.52 | 33.0 | 4.00e-01 | 70.8% | 92.7% |
| 4nqiD00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.52 | 33.0 | 3.86e-01 | 71.7% | 87.1% |
| 2azjA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.52 | 34.0 | 3.66e-01 | 80.9% | 74.6% |
| 7e4mA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.52 | 33.0 | 3.69e-01 | 79.1% | 77.1% |
| 2d1lA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.52 | 35.0 | 3.94e-01 | 71.7% | 87.1% |
| 4jkvB02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 40.0 | 3.95e-01 | 79.4% | 89.8% |
| 4akvA02 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.51 | 31.0 | 3.93e-01 | 89.5% | 100.0% |
| 1fewA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 25.0 | 3.40e-01 | 83.1% | 86.1% |
| 1q16C01 | 1.20.950.20 | Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C | 0.51 | 29.0 | 3.52e-01 | 72.9% | 82.7% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3920855 | 3861.1.1.3 ↗ | alpha bundles › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › PF30661 | 0.88 | 73.0 | 7.98e-01 | 98.2% | 100.0% |
| 3219092 | 5054.1.1.61 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › ELO | 0.73 | 38.0 | 4.26e-01 | 85.8% | 62.4% |
| 3385321 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.70 | 39.0 | 4.74e-01 | 79.1% | 80.9% |
| 3714307 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 33.0 | 4.55e-01 | 78.2% | 100.0% |
| 5021410 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.63 | 38.0 | 4.45e-01 | 73.2% | 84.5% |
| 5036915 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.62 | 22.0 | 2.48e-01 | 76.3% | 38.5% |
| 3351686 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 32.0 | 4.34e-01 | 92.6% | 97.0% |
| 5023678 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.61 | 33.0 | 4.15e-01 | 88.6% | 86.3% |
| 3397081 | 603.2.1.1 ↗ | alpha bundles › STAT-like › STAT › STAT › STAT_alpha | 0.59 | 30.0 | 4.21e-01 | 78.2% | 100.0% |
| 3954410 | 304.28.2.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB TolC docking domain | 0.57 | 31.0 | 3.41e-01 | 86.5% | 60.8% |
| 3738538 | 109.37.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Anion channel SLAC1-related › Anion channel SLAC1-related › SLAC1 | 0.56 | 44.0 | 4.21e-01 | 96.0% | 70.3% |
| 3687934 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 39.0 | 3.77e-01 | 97.2% | 62.8% |
| 3190534 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.55 | 41.0 | 3.73e-01 | 98.2% | 54.7% |
| 3412080 | 603.2.1.9 ↗ | alpha bundles › STAT-like › STAT › STAT › 7tm_6 | 0.53 | 46.0 | 4.56e-01 | 91.4% | 98.3% |
| 3995562 | 602.2.1.0 ↗ | alpha arrays › L-aspartase middle domain-like › RNA-binding protein She2p › RNA-binding protein She2p | 0.53 | 39.0 | 4.42e-01 | 73.8% | 98.0% |
| 3416168 | 4177.1.1.4 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › IMD | 0.52 | 34.0 | 4.12e-01 | 71.7% | 95.9% |
| 3247562 | 5001.1.1.27 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Sre | 0.52 | 36.0 | 3.83e-01 | 91.7% | 76.2% |
| 3517735 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.52 | 31.0 | 3.87e-01 | 71.7% | 95.0% |
| 3413463 | 603.1.1.101 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_6 | 0.51 | 44.0 | 4.45e-01 | 90.5% | 97.8% |
| 3404018 | 603.2.1.12 ↗ | alpha bundles › STAT-like › STAT › STAT › 7tm_7 | 0.51 | 43.0 | 4.21e-01 | 90.5% | 100.0% |
| 3550455 | 109.4.1.508 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › KBP_C | 0.50 | 41.0 | 3.99e-01 | 94.5% | 77.2% |