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glycoprotein

Euk-Vir

Sprivirus_cyprinus

glycoprotein__NP_116747__Sprivirus_cyprinus__696863

Identity

Accession:: NP_116747 ↗
Protein ID:: glycoprotein
Kingdom:: euk

Quality

75.0 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Sprivivirus› Sprivivirus_cyprinus

TaxID: 696863

Cluster

View cluster (70 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-48_284-419

PDB

Domain cluster: rep: glycoprotein__YP_010086563__Kwatta_virus__1272945__D21-47_334-461

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24833.2 best	Rhabdo_glycop_CD	94.0	1.00e-26	72.9%	86.8%

D2 medium residues 49-76_193-282

PDB

Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4d6wA03	2.30.29.130	Mainly Beta › Roll › PH-domain like ›	0.81	63.0	6.92e-01	90.7%	100.0%
2cmzA03	2.30.29.130	Mainly Beta › Roll › PH-domain like ›	0.79	60.0	6.68e-01	93.2%	100.0%
4nswA02	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.61	47.0	4.91e-01	88.1%	87.2%
3qwmA00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.58	47.0	4.59e-01	86.4%	83.5%
3a58A01	2.30.29.90	Mainly Beta › Roll › PH-domain like ›	0.57	47.0	4.23e-01	91.5%	78.7%
1q67A01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.56	45.0	4.33e-01	89.0%	94.3%
1gttA01	3.90.850.10	Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain	0.54	42.0	3.46e-01	81.4%	59.7%
2lydA00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.54	44.0	4.24e-01	89.0%	80.6%
2d0bA01	3.30.310.10	Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein	0.54	30.0	3.46e-01	98.3%	73.0%
1zq1A01	2.30.30.520	Mainly Beta › Roll › SH3 type barrels. ›	0.52	26.0	3.12e-01	86.4%	71.4%
1b33N01	3.30.1490.170	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Allophycocyanin linker chain (domain)	0.52	26.0	3.43e-01	78.0%	98.2%
1wzoB02	3.90.850.10	Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain	0.51	39.0	3.31e-01	81.4%	67.2%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3906596	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.63	53.0	4.71e-01	92.4%	91.8%
3257628	220.1.1.1 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH	0.62	50.0	4.88e-01	86.4%	90.0%
3388895	220.1.1.170 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin	0.59	44.0	4.58e-01	88.1%	85.5%
3776865	220.1.1.1 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH	0.58	47.0	4.50e-01	88.1%	93.6%
1390080	220.1.1.32 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind	0.57	47.0	4.15e-01	91.5%	74.1%
3633079	220.1.1.194 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2nd_LRR	0.57	47.0	4.23e-01	90.7%	82.9%
3271679	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.56	46.0	4.30e-01	88.1%	86.2%
3484225	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.56	45.0	3.59e-01	85.6%	75.7%
3637448	220.1.1.9 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs	0.56	46.0	4.00e-01	89.0%	92.8%
3191989	220.1.1.8 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM	0.55	45.0	4.24e-01	89.0%	84.1%
3398585	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.54	43.0	4.17e-01	84.7%	96.2%
3480227	219.1.1.13 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core	0.51	42.0	3.49e-01	88.1%	69.8%

D3 medium residues 77-192

PDB

Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00974.25 best	Rhabdo_glycop_FD	97.2	1.20e-27	81.9%	94.9%