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glycoprotein

Euk-Vir

Novirhabdovirus_hirame

glycoprotein__NP_919033__Novirhabdovirus_hirame__1980915

Identity

Accession:: NP_919033 ↗
Protein ID:: glycoprotein
Kingdom:: euk

Quality

71.7 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Novirhabdovirus› Novirhabdovirus_hirame

TaxID: 1980915

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 95-206

PDB

Domain cluster: rep: putative_glycoprotein__YP_002905332__Nyavirus_midwayense__644609__D72-196

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00974.25 best	Rhabdo_glycop_FD	68.3	1.20e-18	85.7%	99.0%

D2 medium residues 38-64_341-398_418-436

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4d6wA01	2.30.30.640	Mainly Beta › Roll › SH3 type barrels. › Rhabdovirus spike glycoprotein G, lateral domain	0.70	53.0	5.58e-01	80.8%	89.1%
4ytlA01	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.65	28.0	3.99e-01	77.9%	86.0%
3lx7A01	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.59	26.0	3.78e-01	76.9%	93.5%
2eqjA00	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.58	28.0	3.37e-01	79.8%	69.7%
1m1gB03	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.55	28.0	3.54e-01	77.9%	81.0%
2ekhA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.53	31.0	3.54e-01	80.8%	76.2%
1y96D00	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.53	30.0	3.29e-01	79.8%	68.7%
2digA00	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.52	27.0	3.23e-01	78.8%	75.0%
1vq8T00	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.51	29.0	2.80e-01	79.8%	48.7%
2akkA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.51	29.0	3.31e-01	77.9%	77.0%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3700745	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.66	31.0	4.38e-01	78.8%	94.0%
3503411	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.62	23.0	3.24e-01	75.0%	71.1%
3519125	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.60	28.0	3.94e-01	77.9%	94.0%
4169657	4.1.1.175 ↗	beta barrels › SH3 › SH3 › SH3 › MSSS	0.59	29.0	3.89e-01	79.8%	94.0%
3475240	4.1.1.304 ↗	beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O	0.58	31.0	3.88e-01	76.9%	92.7%
3854638	4.1.1.131 ↗	beta barrels › SH3 › SH3 › SH3 › MLVIN_C	0.56	29.0	2.98e-01	78.8%	51.0%
4318710	4.1.1.97 ↗	beta barrels › SH3 › SH3 › SH3 › DUF150_C	0.56	29.0	3.54e-01	79.8%	78.5%
2756510	4.1.1.131 ↗	beta barrels › SH3 › SH3 › SH3 › MLVIN_C	0.56	28.0	3.06e-01	78.8%	56.2%
5033892	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.53	30.0	3.54e-01	82.7%	84.6%
4505797	4.1.1.97 ↗	beta barrels › SH3 › SH3 › SH3 › DUF150_C	0.53	28.0	3.43e-01	84.6%	81.5%
3490689	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.52	29.0	3.47e-01	78.8%	81.4%
5054535	4.1.1.95 ↗	beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26	0.51	29.0	2.88e-01	79.8%	52.7%
3781440	4.1.1.51 ↗	beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor	0.50	29.0	3.30e-01	78.8%	75.0%

D3 medium residues 65-94_210-291

PDB

Domain cluster: rep: glycoprotein__YP_009305101__Wuhan_Louse_Fly_Virus_5__1608119__D70-87_212-294

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4d6wA03	2.30.29.130	Mainly Beta › Roll › PH-domain like ›	0.73	58.0	6.28e-01	93.8%	100.0%
2cmzA03	2.30.29.130	Mainly Beta › Roll › PH-domain like ›	0.73	57.0	6.22e-01	90.2%	100.0%
7qi3A01	3.30.2140.20	Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold ›	0.61	48.0	3.50e-01	83.9%	56.5%
2gumB03	2.30.29.100	Mainly Beta › Roll › PH-domain like ›	0.61	51.0	5.04e-01	90.2%	100.0%
4iapA01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.59	45.0	4.88e-01	83.0%	96.7%
3wyfE00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.58	49.0	4.52e-01	91.1%	73.9%
3a58A01	2.30.29.90	Mainly Beta › Roll › PH-domain like ›	0.58	48.0	4.19e-01	92.0%	78.2%
1tqzA01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.58	44.0	4.28e-01	81.2%	95.9%
1q67A01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.58	48.0	4.53e-01	92.9%	97.1%
3bgtA01	2.40.400.10	Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like	0.51	37.0	2.97e-01	75.0%	83.1%
8ainB01	3.10.450.250	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor	0.51	39.0	4.04e-01	100.0%	85.7%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3937740	220.1.1.11 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru	0.61	50.0	4.79e-01	90.2%	96.2%
3390227	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.59	47.0	4.81e-01	85.7%	96.2%
3191989	220.1.1.8 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM	0.59	49.0	4.54e-01	91.1%	82.8%
3691812	220.1.1.32 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind	0.57	47.0	4.13e-01	93.8%	82.8%
3873394	220.1.1.2 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1	0.57	45.0	4.13e-01	87.5%	71.0%
3739251	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.54	42.0	2.70e-01	82.1%	30.3%
3592221	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.52	40.0	4.00e-01	84.8%	78.8%
5031673	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.51	34.0	3.54e-01	76.8%	71.4%
3850995	11.1.1.274 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ObR_Ig	0.51	34.0	3.36e-01	91.1%	62.5%
3925894	269.1.1.1 ↗	a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C	0.51	36.0	2.79e-01	75.9%	55.7%
3718961	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.50	45.0	4.03e-01	100.0%	93.8%

D4 medium residues 292-340_399-417

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24833.2 best	Rhabdo_glycop_CD	37.6	3.10e-09	77.9%	38.8%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4d6wB02	6.10.140.740	Special › Helix non-globular › Helix Hairpins ›	0.75	60.0	5.46e-01	100.0%	64.1%
3dfzA02	1.10.8.610	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › SirC, precorrin-2 dehydrogenase, C-terminal helical domain-like	0.62	41.0	4.05e-01	95.6%	63.5%
3djbA01	1.10.472.50	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like	0.62	42.0	3.76e-01	89.7%	50.0%
3e3vA03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.59	36.0	3.90e-01	83.8%	75.0%
4xaiB02	1.10.565.10	Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor	0.57	50.0	3.59e-01	97.1%	90.8%
6al9B00	1.20.59.10	Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase	0.57	47.0	4.29e-01	97.1%	68.1%
3ecqA07	6.10.140.660	Special › Helix non-globular › Helix Hairpins ›	0.56	34.0	3.83e-01	76.5%	88.9%
4jbeB01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.56	46.0	3.11e-01	91.2%	48.9%
5xs2B02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.55	41.0	3.26e-01	79.4%	81.1%
1j09A04	1.10.8.70	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1	0.54	28.0	3.24e-01	73.5%	68.8%
3b7hA00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.51	36.0	3.52e-01	73.5%	68.4%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3711632	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.81	56.0	4.89e-01	72.1%	85.0%
3258173	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.65	38.0	4.23e-01	83.8%	72.7%
3518786	509.1.1.1 ↗	alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH	0.56	40.0	3.56e-01	76.5%	82.9%
3722991	4952.1.1.0 ↗	alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like	0.54	48.0	4.22e-01	100.0%	67.0%